CuGenDBv2

Gene ID	CSPI07G12480
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein GIGANTEA-like isoform X1
Genome location	Chr7:10769646..10769923
RNA-Seq Expression	CSPI07G12480
Synteny	CSPI07G12480
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009409 - response to cold (biological process) GO:0009637 - response to blue light (biological process) GO:0010218 - response to far red light (biological process) GO:0010378 - temperature compensation of the circadian clock (biological process) GO:0042542 - response to hydrogen peroxide (biological process) GO:0048578 - positive regulation of long-day photoperiodism, flowering (biological process) GO:0005654 - nucleoplasm (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR026211 - GIGANTEA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059525.1 protein GIGANTEA-like isoform X1 [Cucumis melo var. makuwa]

1.2e-25

95.31

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Query:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        ME+KNGETERSSS SLATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

XP_008461912.1 PREDICTED: protein GIGANTEA-like isoform X1 [Cucumis melo]

1.2e-25

95.31

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Query:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        ME+KNGETERSSS SLATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

XP_011659108.1 protein GIGANTEA isoform X1 [Cucumis sativus]

1.9e-26

96.88

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Query:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        MERKNGETERSSSGS ATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

XP_031744582.1 protein GIGANTEA isoform X2 [Cucumis sativus]

1.9e-26

96.88

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Query:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        MERKNGETERSSSGS ATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

XP_038898094.1 protein GIGANTEA-like isoform X1 [Benincasa hispida]

9.8e-23

81.94

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Query:  MERK--------NGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        MERK        NGETERS+SGSLATTS++DD ELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERK--------NGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6B6 LATE BLOOMER 1

9.2e-27

96.88

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Query:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        MERKNGETERSSSGS ATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

A0A1S3CG99 protein GIGANTEA-like isoform X1

6.0e-26

95.31

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Query:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        ME+KNGETERSSS SLATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

A0A5D3CSC9 Protein GIGANTEA-like isoform X1

6.0e-26

95.31

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Query:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        ME+KNGETERSSS SLATTSDTDDRELVG+PQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

A0A6J1IKR9 protein GIGANTEA-like isoform X3

9.9e-21

79.69

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Query:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        ME+KNGETERS+SG +AT SDT+D E V +P Q ERKP+RPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

A0A6J1IPZ2 protein GIGANTEA-like isoform X2

9.9e-21

79.69

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Query:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        ME+KNGETERS+SG +AT SDT+D E V +P Q ERKP+RPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

SwissProt top hits

e value

%identity

Alignment

Q9AWL7 Protein GIGANTEA

3.3e-13

53.85

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Query:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQ-ERKPVRPLSPWITDILLAAPLGIRSDYFRW
        ++ ++ E E SS+   A++ ++ ++   G P+ + +RKP+RPLSPWITDILLAAPLGIRSDYFRW
Subjt:  MERKNGETERSSSGSLATTSDTDDRELVGMPQQQ-ERKPVRPLSPWITDILLAAPLGIRSDYFRW

Q9SQI2 Protein GIGANTEA

9.2e-16

60.32

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Query:  ERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        E++NG+TER+      T+         G P Q ERKP+RPLSPWI+DILLAAPLGIRSDYFRW
Subjt:  ERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

Arabidopsis top hits

e value

%identity

Alignment

AT1G22770.1 gigantea protein (GI)

6.5e-17

60.32

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Query:  ERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW
        E++NG+TER+      T+         G P Q ERKP+RPLSPWI+DILLAAPLGIRSDYFRW
Subjt:  ERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

Sequences

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CDS sequence

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ATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAGTGGCAGCCTTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAATGCCTCAGCAACAAGAGAGGAA
ACCTGTACGACCTTTGTCCCCCTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

mRNA sequence

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AGAACGACTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATTCTGCGAATCTTGACTCATTACAATCGCCCGATATACAAGATGGAACGAAAAAATGGTGAAACAGAA
AGAAGCAGTAGTGGCAGCCTTGCCACGACAAGTGACACCGATGATAGGGAACTTGTTGGAATGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCCTGGAT
TACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTAA

Protein sequence

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MERKNGETERSSSGSLATTSDTDDRELVGMPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRW

CSPI07G12480 (gene) of Cucumber (PI 183967) v1 genome