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CSPI07G12600 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G12600
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr7:10890317..10890652
RNA-Seq ExpressionCSPI07G12600
SyntenyCSPI07G12600
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP43092.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]3.1e-4072.48Show/hide
Query:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA
        MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI PPQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FA
Subjt:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA

Query:  DYHFNETIF
        D HFNE IF
Subjt:  DYHFNETIF
KYP47392.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]3.1e-4072.48Show/hide
Query:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA
        MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI PPQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FA
Subjt:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA

Query:  DYHFNETIF
        D HFNE IF
Subjt:  DYHFNETIF
KYP54831.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]3.1e-4072.48Show/hide
Query:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA
        MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI PPQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FA
Subjt:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA

Query:  DYHFNETIF
        D HFNE IF
Subjt:  DYHFNETIF
KYP76714.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan]3.1e-4072.48Show/hide
Query:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA
        MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI PPQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FA
Subjt:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA

Query:  DYHFNETIF
        D HFNE IF
Subjt:  DYHFNETIF
KYP77193.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan]3.1e-4072.48Show/hide
Query:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA
        MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI PPQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FA
Subjt:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA

Query:  DYHFNETIF
        D HFNE IF
Subjt:  DYHFNETIF
TrEMBL top hitse value%identityAlignment
A0A151RKM1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-4072.48Show/hide
Query:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA
        MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI PPQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FA
Subjt:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA

Query:  DYHFNETIF
        D HFNE IF
Subjt:  DYHFNETIF
A0A151RXV3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-4072.48Show/hide
Query:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA
        MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI PPQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FA
Subjt:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA

Query:  DYHFNETIF
        D HFNE IF
Subjt:  DYHFNETIF
A0A151SJC6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-4072.48Show/hide
Query:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA
        MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI PPQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FA
Subjt:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA

Query:  DYHFNETIF
        D HFNE IF
Subjt:  DYHFNETIF
A0A151UBQ7 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)1.5e-4072.48Show/hide
Query:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA
        MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI PPQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FA
Subjt:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA

Query:  DYHFNETIF
        D HFNE IF
Subjt:  DYHFNETIF
A0A151UD30 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)1.5e-4072.48Show/hide
Query:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA
        MR+KLP+S WGHAILH A +IRIRPTSY K++ +QL +G++PN S+LRIF C VYVPI PPQRTKMG QRRLGIYVG+E+PS+I+YLEPLT D+FTA+FA
Subjt:  MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFA

Query:  DYHFNETIF
        D HFNE IF
Subjt:  DYHFNETIF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCAAAGCTTCCATTATCTGTATGGGGTCATGCTATTCTGCATGTAGCGTCAGTTATACGCATAAGACCGACATCTTATCCTAAGTACGCTCTGGTACAATTAGC
TTATGGCCAGGAGCCAAATACTTCATATTTGCGAATTTTTTATTGTGGAGTATATGTTCCAATTTTCCCACCACAACGTACTAAAATGGGATCTCAAAGAAGGTTAGGAA
TATATGTTGGATTTGAAACCCCATCAGTTATTCGATATCTTGAACCCCTAACGAATGATGTATTTACTGCACAATTTGCTGATTATCATTTTAATGAGACAATTTTCCAA
CATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCAAAGCTTCCATTATCTGTATGGGGTCATGCTATTCTGCATGTAGCGTCAGTTATACGCATAAGACCGACATCTTATCCTAAGTACGCTCTGGTACAATTAGC
TTATGGCCAGGAGCCAAATACTTCATATTTGCGAATTTTTTATTGTGGAGTATATGTTCCAATTTTCCCACCACAACGTACTAAAATGGGATCTCAAAGAAGGTTAGGAA
TATATGTTGGATTTGAAACCCCATCAGTTATTCGATATCTTGAACCCCTAACGAATGATGTATTTACTGCACAATTTGCTGATTATCATTTTAATGAGACAATTTTCCAA
CATTAG
Protein sequenceShow/hide protein sequence
MRAKLPLSVWGHAILHVASVIRIRPTSYPKYALVQLAYGQEPNTSYLRIFYCGVYVPIFPPQRTKMGSQRRLGIYVGFETPSVIRYLEPLTNDVFTAQFADYHFNETIFQ
H