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CSPI07G12610 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G12610
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr7:10891854..10892384
RNA-Seq ExpressionCSPI07G12610
SyntenyCSPI07G12610
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152405.1 uncharacterized protein LOC111020141 [Momordica charantia]1.5e-3760Show/hide
Query:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHS--DSKKTT-NDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTS
        MKN +SRPTG TPF EANAV  NN GR  GRGRGR RDRG+G +N++F G  ++  + K+TT N DH GKTPQ+   +S EN+CF CGM  HW   CRT 
Subjt:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHS--DSKKTT-NDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTS

Query:  KHLVDLYQASLKEKGKNVEVNFVYQD-DVYDLSNMTHLYVADYFESPEEK
        KHLVDLYQASLKEKG NVE N  Y D D++D +N+T L V D+ ESP E+
Subjt:  KHLVDLYQASLKEKGKNVEVNFVYQD-DVYDLSNMTHLYVADYFESPEEK

XP_023887420.1 uncharacterized protein LOC111999527 [Quercus suber]1.3e-3049.11Show/hide
Query:  MKNHDSRPTGTTPFPEANAV--------FSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHSDSKKTTNDDH----TGKTPQNNKFKSGENQCFHCGMND
        +KNH SRPTG+TPFPEAN          +   +GRG GRGRGR R RG+G +N      TH+ SK+     H     GK  QN      EN+C+ CGM  
Subjt:  MKNHDSRPTGTTPFPEANAV--------FSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHSDSKKTTNDDH----TGKTPQNNKFKSGENQCFHCGMND

Query:  HWTCTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVYDLSN---------MTHLYVADYFESPEEKSD
        HW+ TCRT KHLVDLYQAS+KEKGK +E NFV  DD+ D  N         MTHL V+D+FE  + K D
Subjt:  HWTCTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVYDLSN---------MTHLYVADYFESPEEKSD

XP_023900592.1 uncharacterized protein LOC112012440 [Quercus suber]6.6e-3048Show/hide
Query:  MKNHDSRPTGTTPFPEANAV--------FSNNNGRGC------GRGRGRSRDRGKGISNYTFCGNTHSDSKKTTNDDH----TGKTPQNNKFKSGENQCF
        +KNH SRPTG+TPFPEAN          +    GRGC      GRGRGR R RG+G +N     +TH+ SK+     H     GK  QN      EN+C+
Subjt:  MKNHDSRPTGTTPFPEANAV--------FSNNNGRGC------GRGRGRSRDRGKGISNYTFCGNTHSDSKKTTNDDH----TGKTPQNNKFKSGENQCF

Query:  HCGMNDHWTCTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVYDLSN---------MTHLYVADYFESPEEKSD
         CGM  HW+ TCRT KHLVDLYQAS+KEKGK +E NFV  DD+ D  N         MTHL V+D+FE  + K D
Subjt:  HCGMNDHWTCTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVYDLSN---------MTHLYVADYFESPEEKSD

XP_027093777.1 uncharacterized protein LOC113714182 [Coffea arabica]1.6e-2847.44Show/hide
Query:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKG--------ISNYTFCGNTHSDSKKTTNDDHTGK-TPQNNKFKSGENQCFHCGMNDHWT
        +KNH+SRPTG +PFPEAN     N+GRG GRGR   R RG+G         S +    N H   ++  + +      P+  + K  E +C+ CGM  HW+
Subjt:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKG--------ISNYTFCGNTHSDSKKTTNDDHTGK-TPQNNKFKSGENQCFHCGMNDHWT

Query:  CTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVY--DLSNMTHLYVADYFESPEE
         TCRT++HLVDLYQASLK+K K+VE NF+YQ D Y  D ++MTHL +AD+FE PE+
Subjt:  CTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVY--DLSNMTHLYVADYFESPEE

XP_031276865.1 uncharacterized protein LOC116135296 [Pistacia vera]4.6e-3147.53Show/hide
Query:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGK---GISNYTFCGNTHSDSKKTTNDD---HTGKTPQNNKFKSGENQCFHCGMNDHWTCTC
        MKNH++RPTG+TPFP+ N   SNN+GRG GRGRGR R + +      NY +  + +   +K  ND+     GK+ Q+   K+ EN C+ CGM  HW+CTC
Subjt:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGK---GISNYTFCGNTHSDSKKTTNDD---HTGKTPQNNKFKSGENQCFHCGMNDHWTCTC

Query:  RTSKHLVDLYQASLKEK-----------GKNVEVNFVYQDDVYD--LSNMTHLYVADYFESP
        R  KHLV+LYQASLKEK            +N E NF YQDD +D    ++THL VAD+F++P
Subjt:  RTSKHLVDLYQASLKEK-----------GKNVEVNFVYQDDVYD--LSNMTHLYVADYFESP

TrEMBL top hitse value%identityAlignment
A0A6J1DDU8 uncharacterized protein LOC1110201417.1e-3860Show/hide
Query:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHS--DSKKTT-NDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTS
        MKN +SRPTG TPF EANAV  NN GR  GRGRGR RDRG+G +N++F G  ++  + K+TT N DH GKTPQ+   +S EN+CF CGM  HW   CRT 
Subjt:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHS--DSKKTT-NDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTS

Query:  KHLVDLYQASLKEKGKNVEVNFVYQD-DVYDLSNMTHLYVADYFESPEEK
        KHLVDLYQASLKEKG NVE N  Y D D++D +N+T L V D+ ESP E+
Subjt:  KHLVDLYQASLKEKGKNVEVNFVYQD-DVYDLSNMTHLYVADYFESPEEK

A0A6P6T0E9 uncharacterized protein LOC1136963315.1e-2848.75Show/hide
Query:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGR----GRGRSRDRGKG--------ISNYTFC-GNTHSDSKKTTNDDHTGKTPQNNKFKSGENQCFHCGMN
        +KNH+SRPTG +PFPEAN     N+GRG GR    GRGRSR RG+G        +S   +  G   + S++  ND      P+  + K  E +C+ CGM 
Subjt:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGR----GRGRSRDRGKG--------ISNYTFC-GNTHSDSKKTTNDDHTGKTPQNNKFKSGENQCFHCGMN

Query:  DHWTCTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVY--DLSNMTHLYVADYFESPEE
         HW+ TCRT+KHLVDLYQASLK+K K+VE NF+ Q + Y  D ++MTHL +AD+FE PE+
Subjt:  DHWTCTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVY--DLSNMTHLYVADYFESPEE

A0A6P6UVW2 uncharacterized protein LOC1137141827.9e-2947.44Show/hide
Query:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKG--------ISNYTFCGNTHSDSKKTTNDDHTGK-TPQNNKFKSGENQCFHCGMNDHWT
        +KNH+SRPTG +PFPEAN     N+GRG GRGR   R RG+G         S +    N H   ++  + +      P+  + K  E +C+ CGM  HW+
Subjt:  MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKG--------ISNYTFCGNTHSDSKKTTNDDHTGK-TPQNNKFKSGENQCFHCGMNDHWT

Query:  CTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVY--DLSNMTHLYVADYFESPEE
         TCRT++HLVDLYQASLK+K K+VE NF+YQ D Y  D ++MTHL +AD+FE PE+
Subjt:  CTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVY--DLSNMTHLYVADYFESPEE

A0A6P6VE93 uncharacterized protein LOC1137202981.8e-2848.72Show/hide
Query:  MKNHDSRPTGTTPFPEANAVFSNNNGR--------GCGRGRGRSRDRGKGISNYTFCGNTHSDSKKTTNDDHTGK-TPQNNKFKSGENQCFHCGMNDHWT
        +KNH+SRPTG +PFPEAN    +N+GR        G GRGRGR+  RG+  S +    N H D ++  + +      P+  K K  E +CF CGM  HW+
Subjt:  MKNHDSRPTGTTPFPEANAVFSNNNGR--------GCGRGRGRSRDRGKGISNYTFCGNTHSDSKKTTNDDHTGK-TPQNNKFKSGENQCFHCGMNDHWT

Query:  CTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVY--DLSNMTHLYVADYFESPEE
         TCRT+K+LVDLYQASLK+K K VE NF+ Q D Y  D ++MTHL +AD+FE PE+
Subjt:  CTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVY--DLSNMTHLYVADYFESPEE

A0A6P6VIX9 uncharacterized protein LOC1137242065.1e-2849.38Show/hide
Query:  MKNHDSRPTGTTPFPEANAV-FSNN-NGRGCGRGRGRSRDRGKGIS------------NYTFCGNTHSDSKKTTNDDHTGKTPQNNKFKSGENQCFHCGM
        +KNH+SRPTG +PFPEAN   F N+  GRGCGR  GR R RG G S            NY+     +   K+  N D     P+N + K  E +C+ CGM
Subjt:  MKNHDSRPTGTTPFPEANAV-FSNN-NGRGCGRGRGRSRDRGKGIS------------NYTFCGNTHSDSKKTTNDDHTGKTPQNNKFKSGENQCFHCGM

Query:  NDHWTCTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVY---DLSNMTHLYVADYFESPEE
          HW+ TCRT++HLVDLYQASLK+K KNVE NF+ Q + Y   D ++MTHL VAD+FE PE+
Subjt:  NDHWTCTCRTSKHLVDLYQASLKEKGKNVEVNFVYQDDVY---DLSNMTHLYVADYFESPEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAACCATGACTCTCGACCAACTGGAACAACACCATTCCCTGAAGCGAATGCTGTATTTTCAAACAATAATGGTCGAGGTTGTGGTCGTGGTCGTGGTCGAAGTCG
TGACCGTGGTAAAGGAATAAGTAATTATACCTTTTGTGGTAATACTCATTCAGATTCCAAAAAAACCACAAATGATGATCATACAGGAAAAACTCCACAAAATAATAAAT
TTAAAAGTGGTGAAAATCAATGCTTTCATTGTGGTATGAATGATCATTGGACTTGTACTTGTCGTACATCCAAGCACTTAGTCGACCTCTATCAAGCCTCATTGAAGGAA
AAAGGGAAGAATGTGGAAGTAAACTTTGTCTATCAAGATGATGTCTATGACCTTTCGAATATGACACATTTGTATGTTGCTGATTATTTTGAGTCTCCTGAAGAGAAATC
TGATGTTAATTAA
mRNA sequenceShow/hide mRNA sequence
CATTGAGAAAGGGGGTTTAAAAAATATTCTGAACTCATATCATGCTTTCTTGTGGCTGAACAAAATAACGAGTTATTAATGAAAAACCATGACTCTCGACCAACTGGAAC
AACACCATTCCCTGAAGCGAATGCTGTATTTTCAAACAATAATGGTCGAGGTTGTGGTCGTGGTCGTGGTCGAAGTCGTGACCGTGGTAAAGGAATAAGTAATTATACCT
TTTGTGGTAATACTCATTCAGATTCCAAAAAAACCACAAATGATGATCATACAGGAAAAACTCCACAAAATAATAAATTTAAAAGTGGTGAAAATCAATGCTTTCATTGT
GGTATGAATGATCATTGGACTTGTACTTGTCGTACATCCAAGCACTTAGTCGACCTCTATCAAGCCTCATTGAAGGAAAAAGGGAAGAATGTGGAAGTAAACTTTGTCTA
TCAAGATGATGTCTATGACCTTTCGAATATGACACATTTGTATGTTGCTGATTATTTTGAGTCTCCTGAAGAGAAATCTGATGTTAATTAA
Protein sequenceShow/hide protein sequence
MKNHDSRPTGTTPFPEANAVFSNNNGRGCGRGRGRSRDRGKGISNYTFCGNTHSDSKKTTNDDHTGKTPQNNKFKSGENQCFHCGMNDHWTCTCRTSKHLVDLYQASLKE
KGKNVEVNFVYQDDVYDLSNMTHLYVADYFESPEEKSDVN