; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G12860 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G12860
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr7:11320294..11321437
RNA-Seq ExpressionCSPI07G12860
SyntenyCSPI07G12860
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN71647.1 hypothetical protein VITISV_015503 [Vitis vinifera]9.8e-1962.5Show/hide
Query:  DPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR
        DPR +QCELEV++IIHLQN+ NQLPDAF+D KKVTKSHI  AN P++ID+P   +  + S+   KC RPVDSKD  P+KR
Subjt:  DPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR

KAF7152015.1 hypothetical protein RHSIM_Rhsim01G0238600 [Rhododendron simsii]1.3e-1860Show/hide
Query:  HNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIP---TQHVVIDASRTSQKCDRPVDSKDKNPQKR
        H DPRT+QCELEV++IIHLQ++ N+LPDAF D K+VTKSHI AAN+P++I++P   T     D S+T QK  RPV +KDK P+KR
Subjt:  HNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIP---TQHVVIDASRTSQKCDRPVDSKDKNPQKR

KAG7537104.1 Zinc finger CCHC-type superfamily [Arabidopsis suecica]2.6e-1958.51Show/hide
Query:  VRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVID---ASRTSQKCDRPVDSKDKNPQKR
        ++ + P  LH DP T Q ELEVR+IIHLQ++ NQLPDAF D K + KSHI AANVP++I+IP +H   D    SRT  K  RPV SKDKNP+KR
Subjt:  VRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVID---ASRTSQKCDRPVDSKDKNPQKR

KAG7560697.1 Zinc finger CCHC-type [Arabidopsis thaliana x Arabidopsis arenosa]7.5e-1957.45Show/hide
Query:  VRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVID---ASRTSQKCDRPVDSKDKNPQKR
        ++   P  LH DP T Q ELEVR+I+HLQ++ NQLPDAF D K + KSHI AANVP++I+IP +H   D    SRT  K  RPV SKDKNP+KR
Subjt:  VRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVID---ASRTSQKCDRPVDSKDKNPQKR

RVW26456.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]9.8e-1960.92Show/hide
Query:  TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR
        T    H DPRT+QCELEV++IIHLQN+VNQLPDAF+D KKVTKSHI AAN P++ID+P   +  + S+   K  RPV SKD  P+KR
Subjt:  TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR

TrEMBL top hitse value%identityAlignment
A0A438C2Q1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-1859.77Show/hide
Query:  TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR
        T    H DPRT+QCELEV++IIHLQN+ NQLPDAF+D KKVTKSHI AAN P++ID+P   +  + S+   K  RPV SKD  P+KR
Subjt:  TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR

A0A438CTC8 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-1960.92Show/hide
Query:  TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR
        T    H DPRT+QCELEV++IIHLQN+VNQLPDAF+D KKVTKSHI AAN P++ID+P   +  + S+   K  RPV SKD  P+KR
Subjt:  TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR

A0A438HZK0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-1859.77Show/hide
Query:  TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR
        T    H DPRT+QCELEV++IIHLQN+ NQLPDAF+D KKVTKSHI AAN P++ID+P   +  + S+   K  RPV SKD  P+KR
Subjt:  TPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR

A0A6D2JDS3 Uncharacterized protein6.2e-1957.45Show/hide
Query:  VRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQ---KCDRPVDSKDKNPQKR
        ++   P  LH DP T Q ELEVR+I+HLQN+ NQLPDAF D K VTKSHI AAN P++I+IP +    D +R S+   K  RPV SKDKNP+KR
Subjt:  VRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQ---KCDRPVDSKDKNPQKR

A5AU99 Uncharacterized protein4.7e-1962.5Show/hide
Query:  DPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR
        DPR +QCELEV++IIHLQN+ NQLPDAF+D KKVTKSHI  AN P++ID+P   +  + S+   KC RPVDSKD  P+KR
Subjt:  DPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATATTTGTGAGGACAACAACCCCCAAATATCTCCACAATGATCCTCGTACAGATCAATGTGAACTTGAAGTTCGAAAAATAATTCATTTACAAAATGTAGTAAA
TCAGTTACCAGATGCATTTGTCGATGCAAAGAAAGTAACTAAATCACATATAGTAGCTGCAAATGTTCCATCAAAGATTGATATCCCTACACAACATGTTGTCATTGATG
CATCACGAACTAGCCAGAAGTGTGATAGACCAGTTGATTCCAAAGACAAAAATCCTCAGAAAAGGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATATTTGTGAGGACAACAACCCCCAAATATCTCCACAATGATCCTCGTACAGATCAATGTGAACTTGAAGTTCGAAAAATAATTCATTTACAAAATGTAGTAAA
TCAGTTACCAGATGCATTTGTCGATGCAAAGAAAGTAACTAAATCACATATAGTAGCTGCAAATGTTCCATCAAAGATTGATATCCCTACACAACATGTTGTCATTGATG
CATCACGAACTAGCCAGAAGTGTGATAGACCAGTTGATTCCAAAGACAAAAATCCTCAGAAAAGGAATTGA
Protein sequenceShow/hide protein sequence
MVIFVRTTTPKYLHNDPRTDQCELEVRKIIHLQNVVNQLPDAFVDAKKVTKSHIVAANVPSKIDIPTQHVVIDASRTSQKCDRPVDSKDKNPQKRN