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CSPI07G12940 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G12940
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
Genome locationChr7:11388591..11391672
RNA-Seq ExpressionCSPI07G12940
SyntenyCSPI07G12940
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033671.1 U-box domain-containing protein 32 isoform X4 [Cucumis melo var. makuwa]9.6e-0952.27Show/hide
Query:  DLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSL
        DLSS RMI T RH+RGLYLLD+D  SS ISRTS +    I   F  ++    LN I+  F  N I+QP+L LLSIV+F D  R  R L
Subjt:  DLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSL

KAA0052367.1 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2 [Cucumis melo var. makuwa]4.7e-0848.91Show/hide
Query:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND
        +DLSS RM  T RH+  LYLLD+D  +SS+S+TSLLS                 NNI S      I+QP+   LSIV FG H RSL SLGND
Subjt:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND

TYK08586.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.2e-1563.53Show/hide
Query:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNP-KLNNIESCFTRNPISQPDLLLLSIVIFGDHRR
        SD S RRMI TT H+RGLYLLD+DA+SSSISRTSLLSS     + +  +T   +L N ES F  NPISQP+LL LSIV+FGDH R
Subjt:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNP-KLNNIESCFTRNPISQPDLLLLSIVIFGDHRR

TYK09422.1 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2 [Cucumis melo var. makuwa]4.7e-0848.91Show/hide
Query:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND
        +DLSS RM  T RH+  LYLLD+D  +SS+S+TSLLS                 NNI S      I+QP+   LSIV FG H RSL SLGND
Subjt:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND

TYK14182.1 reverse transcriptase [Cucumis melo var. makuwa]4.7e-0847.25Show/hide
Query:  DLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND
        DLS +RMI   +HN+  YL D+DA SSS SR   LSS      + T       N+IES F  N  SQP+L LL I++FG+H RSL  L  D
Subjt:  DLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND

TrEMBL top hitse value%identityAlignment
A0A5A7SW57 U-box domain-containing protein 32 isoform X44.6e-0952.27Show/hide
Query:  DLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSL
        DLSS RMI T RH+RGLYLLD+D  SS ISRTS +    I   F  ++    LN I+  F  N I+QP+L LLSIV+F D  R  R L
Subjt:  DLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSL

A0A5A7UD01 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 22.3e-0848.91Show/hide
Query:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND
        +DLSS RM  T RH+  LYLLD+D  +SS+S+TSLLS                 NNI S      I+QP+   LSIV FG H RSL SLGND
Subjt:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND

A0A5D3CDS8 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 22.3e-0848.91Show/hide
Query:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND
        +DLSS RM  T RH+  LYLLD+D  +SS+S+TSLLS                 NNI S      I+QP+   LSIV FG H RSL SLGND
Subjt:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND

A0A5D3CE12 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-1563.53Show/hide
Query:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNP-KLNNIESCFTRNPISQPDLLLLSIVIFGDHRR
        SD S RRMI TT H+RGLYLLD+DA+SSSISRTSLLSS     + +  +T   +L N ES F  NPISQP+LL LSIV+FGDH R
Subjt:  SDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNP-KLNNIESCFTRNPISQPDLLLLSIVIFGDHRR

A0A5D3CS18 Reverse transcriptase2.3e-0847.25Show/hide
Query:  DLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND
        DLS +RMI   +HN+  YL D+DA SSS SR   LSS      + T       N+IES F  N  SQP+L LL I++FG+H RSL  L  D
Subjt:  DLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGACTTATCCTATCCATCGGATCTGAGCTCAAGGAGGATGATTGTCACTACTCGACACAATAGGGGTCTTTACTTGCTTGATAATGATGCCTTCTCTAGTAGCAT
TTCTAGGACGAGTCTTTTATCTTCCCAACCCATAGAAACACAATTCAATACAAAGATTACAAACCCTAAGCTAAACAACATTGAGTCTTGTTTTACTCGCAACCCTATAA
GCCAACCCGACCTTTTACTCTTATCCATAGTGATATTTGGAGACCATCGAAGGTCACTACGTTCTCTGGGAAATGATGGTTTA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGACTTATCCTATCCATCGGATCTGAGCTCAAGGAGGATGATTGTCACTACTCGACACAATAGGGGTCTTTACTTGCTTGATAATGATGCCTTCTCTAGTAGCAT
TTCTAGGACGAGTCTTTTATCTTCCCAACCCATAGAAACACAATTCAATACAAAGATTACAAACCCTAAGCTAAACAACATTGAGTCTTGTTTTACTCGCAACCCTATAA
GCCAACCCGACCTTTTACTCTTATCCATAGTGATATTTGGAGACCATCGAAGGTCACTACGTTCTCTGGGAAATGATGGTTTA
Protein sequenceShow/hide protein sequence
MSDLSYPSDLSSRRMIVTTRHNRGLYLLDNDAFSSSISRTSLLSSQPIETQFNTKITNPKLNNIESCFTRNPISQPDLLLLSIVIFGDHRRSLRSLGNDGL