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CSPI07G13030 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G13030
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationChr7:11485434..11486011
RNA-Seq ExpressionCSPI07G13030
SyntenyCSPI07G13030
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031741708.1 uncharacterized protein LOC116403903 [Cucumis sativus]1.3e-3475.76Show/hide
Query:  EALATLEMTLEGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD
        E  + + ++ EGT TRCDQE+AILL KERLLPEMY NDKNGENN VWYLDNGASNH+TGHREKF ELD++FT RVKFGDGL IQ MEK  VMFECKN D
Subjt:  EALATLEMTLEGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD

XP_031741713.1 uncharacterized protein LOC116403908 [Cucumis sativus]1.8e-3974.34Show/hide
Query:  GEDMVVALNVKIMLEALATLEMTLEGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIM
        G D    L   +  E    + M+ EGT TRCDQEDAILL+KERLLPEMYCNDKNGENNDVWYLDNGASNH+ GHREKFQELDE+FT +VKFGDG TIQIM
Subjt:  GEDMVVALNVKIMLEALATLEMTLEGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIM

Query:  EKETVMFECKNSD
        EK TVMFECKN D
Subjt:  EKETVMFECKNSD

XP_031741744.1 uncharacterized protein LOC116403940 [Cucumis sativus]3.2e-3372.82Show/hide
Query:  GEDMVVALNVKIMLEALATLEMTLEGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIM
        G D    L   +  E    + M+ EGT TRCDQEDAILLSKERLLPEMYCND NGENNDVWYLDNGASNH+TGHREKFQELDE+FT RVKFGDG TIQI 
Subjt:  GEDMVVALNVKIMLEALATLEMTLEGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIM

Query:  EKE
         K+
Subjt:  EKE

XP_031745073.1 uncharacterized protein LOC116405251 [Cucumis sativus]2.4e-2870.97Show/hide
Query:  GEDMVVALNVKIMLEALATLEMTLEGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGD
        G D    L   +  E    + M+ EGT T CDQEDAILLSKERLLPEMYCN+KNGENNDVWYLDNGASNH+ GHR+KFQELDE+FT RVKFGD
Subjt:  GEDMVVALNVKIMLEALATLEMTLEGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGD

XP_042450925.1 uncharacterized protein LOC122035851 [Zingiber officinale]9.1e-2869.07Show/hide
Query:  TLEMTL--EGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD
        TL MT+  E + TR +++D ILL++ERLLPEMY N K  E+ DVWYLDNGASNH+TGHREKFQELDET T RV+FGDG TI+IM K TV+FECKN D
Subjt:  TLEMTL--EGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD

TrEMBL top hitse value%identityAlignment
A0A5A7SIJ0 Keratin, type I cytoskeletal 9-like5.7e-2059.09Show/hide
Query:  GTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD
        GTC   D+   +LLSKE+LLP++Y N+KN EN  VWYL+NGASNH+T H EK QELD + T RVKF +  TIQIM K  ++FE +NSD
Subjt:  GTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD

A0A5K0VFR7 Uncharacterized protein (Fragment)1.6e-1748.78Show/hide
Query:  DQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD
        ++++A+LL++E++ PE++  +   E  D WYLDNGA+NH+TG + KF+EL+E  T  VKFGDG ++QIM K +++F+CKN D
Subjt:  DQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD

Q10RM4 Retrotransposon protein, putative, unclassified5.0e-1651.95Show/hide
Query:  ILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD
        +++ ++R+ P++   D  G   DVW+LDNGASNH+TG R KF+ELDE+ T RVKFGD  T+QI  K +++F CKN D
Subjt:  ILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD

Q338J6 Retrotransposon protein, putative, unclassified5.6e-1546.43Show/hide
Query:  RCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD
        R D    +++ +ER+ P +   +K     D+WYLDNGASNH++G R KF+ELDET T +V+FGD  ++QIM   +++F CKN D
Subjt:  RCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD

Q94I37 Putative retroelement5.6e-1546.43Show/hide
Query:  RCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD
        R D    +++ +ER+ P +   +K     D+WYLDNGASNH++G R KF+ELDET T +V+FGD  ++QIM   +++F CKN D
Subjt:  RCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDGLTIQIMEKETVMFECKNSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAATGGAAAGGGCGCGGATTCGGTGGTACCGATCGAGGAAGATGGTGAGGACATGGTCGTGGCACTGAACGTTAAAATAATGCTAGAGGCACTAGCAACACTGGA
AATGACACTCGAGGGGACATGCACTAGATGTGATCAGGAGGATGCCATACTACTCAGCAAAGAGCGGTTGTTGCCAGAGATGTATTGCAACGATAAGAATGGAGAAAATA
ATGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACGTGACTGGCCACCGTGAGAAGTTTCAAGAATTAGATGAAACCTTCACTAGGAGGGTGAAGTTTGGCGATGGA
TTAACCATTCAGATCATGGAAAAAGAAACGGTCATGTTCGAGTGCAAGAACAGTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGAATGGAAAGGGCGCGGATTCGGTGGTACCGATCGAGGAAGATGGTGAGGACATGGTCGTGGCACTGAACGTTAAAATAATGCTAGAGGCACTAGCAACACTGGA
AATGACACTCGAGGGGACATGCACTAGATGTGATCAGGAGGATGCCATACTACTCAGCAAAGAGCGGTTGTTGCCAGAGATGTATTGCAACGATAAGAATGGAGAAAATA
ATGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACGTGACTGGCCACCGTGAGAAGTTTCAAGAATTAGATGAAACCTTCACTAGGAGGGTGAAGTTTGGCGATGGA
TTAACCATTCAGATCATGGAAAAAGAAACGGTCATGTTCGAGTGCAAGAACAGTGATTAG
Protein sequenceShow/hide protein sequence
MTNGKGADSVVPIEEDGEDMVVALNVKIMLEALATLEMTLEGTCTRCDQEDAILLSKERLLPEMYCNDKNGENNDVWYLDNGASNHVTGHREKFQELDETFTRRVKFGDG
LTIQIMEKETVMFECKNSD