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CSPI07G13130 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G13130
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr7:11541069..11541670
RNA-Seq ExpressionCSPI07G13130
SyntenyCSPI07G13130
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033985.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-0428.18Show/hide
Query:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQINASPASNS---EFAVHLKKLWKSKVPNKSYKYDMLQQH
        +W+ ++  W+I+ RRPL DR+   W+ I+ SLP +  +  K +P+W+ S+++ + + S   +     SNS    +   LK LW+S +  K   +     H
Subjt:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQINASPASNS---EFAVHLKKLWKSKVPNKSYKYDMLQQH

Query:  KDSKRGDYLQ
        +     D +Q
Subjt:  KDSKRGDYLQ

KAA0045532.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-0427.27Show/hide
Query:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH
        +W+  +  W++  RRPL +R+   W +I+ SLP + +N    +PTW  S+   + + S   I    +S    + +   LK LW+S +P K   +     H
Subjt:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH

Query:  KDSKRGDYLQ
        +     D +Q
Subjt:  KDSKRGDYLQ

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-0427.27Show/hide
Query:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH
        +W+  +  W++  RRPL +R+   W +I+ SLP + +N    +PTW  S+   + + S   I    +S    + +   LK LW+S +P K   +     H
Subjt:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH

Query:  KDSKRGDYLQ
        +     D +Q
Subjt:  KDSKRGDYLQ

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-0427.27Show/hide
Query:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH
        +W+  +  W++  RRPL +R+   W +I+ SLP + +N    +PTW  S+   + + S   I    +S    + +   LK LW+S +P K   +     H
Subjt:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH

Query:  KDSKRGDYLQ
        +     D +Q
Subjt:  KDSKRGDYLQ

TYK28859.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-0427.27Show/hide
Query:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH
        +W+  +  W++  RRPL +R+   W +I+ SLP + +N    +PTW  S+   + + S   I    +S    + +   LK LW+S +P K   +     H
Subjt:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH

Query:  KDSKRGDYLQ
        +     D +Q
Subjt:  KDSKRGDYLQ

TrEMBL top hitse value%identityAlignment
A0A5A7SXS1 LINE-1 retrotransposable element ORF2 protein6.6e-0528.18Show/hide
Query:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQINASPASNS---EFAVHLKKLWKSKVPNKSYKYDMLQQH
        +W+ ++  W+I+ RRPL DR+   W+ I+ SLP +  +  K +P+W+ S+++ + + S   +     SNS    +   LK LW+S +  K   +     H
Subjt:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQINASPASNS---EFAVHLKKLWKSKVPNKSYKYDMLQQH

Query:  KDSKRGDYLQ
        +     D +Q
Subjt:  KDSKRGDYLQ

A0A5A7TQA8 LINE-1 retrotransposable element ORF2 protein1.1e-0427.27Show/hide
Query:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH
        +W+  +  W++  RRPL +R+   W +I+ SLP + +N    +PTW  S+   + + S   I    +S    + +   LK LW+S +P K   +     H
Subjt:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH

Query:  KDSKRGDYLQ
        +     D +Q
Subjt:  KDSKRGDYLQ

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein1.1e-0427.27Show/hide
Query:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH
        +W+  +  W++  RRPL +R+   W +I+ SLP + +N    +PTW  S+   + + S   I    +S    + +   LK LW+S +P K   +     H
Subjt:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH

Query:  KDSKRGDYLQ
        +     D +Q
Subjt:  KDSKRGDYLQ

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein1.1e-0427.27Show/hide
Query:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH
        +W+  +  W++  RRPL +R+   W +I+ SLP + +N    +PTW  S+   + + S   I    +S    + +   LK LW+S +P K   +     H
Subjt:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH

Query:  KDSKRGDYLQ
        +     D +Q
Subjt:  KDSKRGDYLQ

A0A5D3DZM5 LINE-1 retrotransposable element ORF2 protein1.1e-0427.27Show/hide
Query:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH
        +W+  +  W++  RRPL +R+   W +I+ SLP + +N    +PTW  S+   + + S   I    +S    + +   LK LW+S +P K   +     H
Subjt:  MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQI---NASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQH

Query:  KDSKRGDYLQ
        +     D +Q
Subjt:  KDSKRGDYLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAATGTGAACAATCAATCATGGGATATACACAGTAGAAGACCTCTAAGAGATAGAAAAGCATTACAATGGAGAACTATACAGAGCAGCTTACCCCCTCTCATAGA
CAACCTCCACAAAGATCAACCGACTTGGAAATCAAGCAACGACAGCTCATTCGCTATTAAATCTGTGATCCAAATAAATGCTTCACCTGCTAGTAATTCAGAATTTGCAG
TCCATCTCAAGAAATTATGGAAATCTAAAGTCCCAAACAAATCTTATAAGTACGATATGCTCCAACAACATAAAGACTCAAAGAGGGGTGATTATCTTCAATATGTTGAT
TGTCATCACATGGTCCATATGGTTGGAAAGAATCAACAGGCTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAATGTGAACAATCAATCATGGGATATACACAGTAGAAGACCTCTAAGAGATAGAAAAGCATTACAATGGAGAACTATACAGAGCAGCTTACCCCCTCTCATAGA
CAACCTCCACAAAGATCAACCGACTTGGAAATCAAGCAACGACAGCTCATTCGCTATTAAATCTGTGATCCAAATAAATGCTTCACCTGCTAGTAATTCAGAATTTGCAG
TCCATCTCAAGAAATTATGGAAATCTAAAGTCCCAAACAAATCTTATAAGTACGATATGCTCCAACAACATAAAGACTCAAAGAGGGGTGATTATCTTCAATATGTTGAT
TGTCATCACATGGTCCATATGGTTGGAAAGAATCAACAGGCTATTTAA
Protein sequenceShow/hide protein sequence
MWNVNNQSWDIHSRRPLRDRKALQWRTIQSSLPPLIDNLHKDQPTWKSSNDSSFAIKSVIQINASPASNSEFAVHLKKLWKSKVPNKSYKYDMLQQHKDSKRGDYLQYVD
CHHMVHMVGKNQQAI