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CSPI07G13330 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G13330
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr7:11780563..11780846
RNA-Seq ExpressionCSPI07G13330
SyntenyCSPI07G13330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN44523.1 hypothetical protein Csa_015712 [Cucumis sativus]2.1e-3594.81Show/hide
Query:  MANPVPECTLRDLAAPDFTQQPFALPIPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD
        M NP+PECTLRDLAAPDFTQQPFALPIPRRHVVLSDDPHKFTKEFHVVYSNMGPH+VTKEERNL+TFLLALKDDAKD
Subjt:  MANPVPECTLRDLAAPDFTQQPFALPIPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD

PIN19322.1 hypothetical protein CDL12_08003 [Handroanthus impetiginosus]3.7e-0843.62Show/hide
Query:  MANPVPECTLRDLAAPDFTQQPFALPIPRRHV-----------------VLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD
        MAN   E TLR+LAAPD TQQP  +  P+  V                 + ++DPHK  KE HVV S+M PH VT E+  L  F  +L D AKD
Subjt:  MANPVPECTLRDLAAPDFTQQPFALPIPRRHV-----------------VLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD

XP_023755650.1 uncharacterized protein LOC111904106 [Lactuca sativa]1.1e-0739.56Show/hide
Query:  NPVPECTLRDLAAPDFTQQPFALP----------------IPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD
        NP PE TLR  A  + TQQP  +                 +P   V+ ++ PHKF  EFHVVY  M PH VT+++  L  F  A++D AKD
Subjt:  NPVPECTLRDLAAPDFTQQPFALP----------------IPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD

XP_027152163.1 uncharacterized protein LOC113752239 [Coffea eugenioides]1.8e-0742.55Show/hide
Query:  MANPVPECTLRDLAAPDFTQQPFALP-----------------IPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD
        MAN   E TLR+LAAPD  QQP  +                  +P  H +  +DPHK  KEFHVV S M P  VT+E+  L  F  +L D AKD
Subjt:  MANPVPECTLRDLAAPDFTQQPFALP-----------------IPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD

XP_027166136.1 uncharacterized protein LOC113766110 [Coffea eugenioides]1.8e-0742.55Show/hide
Query:  MANPVPECTLRDLAAPDFTQQPFALP-----------------IPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD
        MAN   E TLR+LAAPD  QQP  +                  +P  H +  +DPHK  KEFHVV S M P  VT+E+  L  F  +L D AKD
Subjt:  MANPVPECTLRDLAAPDFTQQPFALP-----------------IPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD

TrEMBL top hitse value%identityAlignment
A0A0A0K507 Uncharacterized protein1.0e-3594.81Show/hide
Query:  MANPVPECTLRDLAAPDFTQQPFALPIPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD
        M NP+PECTLRDLAAPDFTQQPFALPIPRRHVVLSDDPHKFTKEFHVVYSNMGPH+VTKEERNL+TFLLALKDDAKD
Subjt:  MANPVPECTLRDLAAPDFTQQPFALPIPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD

A0A2G9HP75 Retrotrans_gag domain-containing protein1.8e-0843.62Show/hide
Query:  MANPVPECTLRDLAAPDFTQQPFALPIPRRHV-----------------VLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD
        MAN   E TLR+LAAPD TQQP  +  P+  V                 + ++DPHK  KE HVV S+M PH VT E+  L  F  +L D AKD
Subjt:  MANPVPECTLRDLAAPDFTQQPFALPIPRRHV-----------------VLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD

A0A6J1DRS5 uncharacterized protein LOC1110232488.8e-0840.7Show/hide
Query:  TLRDLAAPDFTQQPFALPIPR-----------------RHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD
        TL+ LAAPD  QQP  +  P                    V   +DPHK  KEFH+V S M PH V +++ NL  F  +LKD AKD
Subjt:  TLRDLAAPDFTQQPFALPIPR-----------------RHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD

A0A6P6SET8 uncharacterized protein LOC1136905528.8e-0842.55Show/hide
Query:  MANPVPECTLRDLAAPDFTQQPFALP-----------------IPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD
        MAN   E TLR+LAAPD  QQP  +                  +P  H +  +DPHK  KEFHVV S M P  VT+E+  L  F  +L D AKD
Subjt:  MANPVPECTLRDLAAPDFTQQPFALP-----------------IPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD

A0A6P6WXZ3 uncharacterized protein LOC1137355118.8e-0842.55Show/hide
Query:  MANPVPECTLRDLAAPDFTQQPFALP-----------------IPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD
        MAN   E TLR+LAAPD  QQP  +                  +P  H +  +DPHK  KEFHVV S M P  VT+E+  L  F  +L D AKD
Subjt:  MANPVPECTLRDLAAPDFTQQPFALP-----------------IPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATCCTGTGCCAGAGTGTACCTTGAGGGATCTTGCTGCCCCTGACTTCACCCAACAACCCTTTGCTTTACCTATCCCGAGACGACATGTAGTTTTGAGTGATGA
CCCCCATAAATTCACGAAGGAGTTCCATGTGGTTTACAGCAACATGGGGCCACACAAAGTTACTAAGGAGGAACGAAACCTCAACACCTTCCTCTTGGCATTGAAGGATG
ATGCCAAAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAATCCTGTGCCAGAGTGTACCTTGAGGGATCTTGCTGCCCCTGACTTCACCCAACAACCCTTTGCTTTACCTATCCCGAGACGACATGTAGTTTTGAGTGATGA
CCCCCATAAATTCACGAAGGAGTTCCATGTGGTTTACAGCAACATGGGGCCACACAAAGTTACTAAGGAGGAACGAAACCTCAACACCTTCCTCTTGGCATTGAAGGATG
ATGCCAAAGACTGA
Protein sequenceShow/hide protein sequence
MANPVPECTLRDLAAPDFTQQPFALPIPRRHVVLSDDPHKFTKEFHVVYSNMGPHKVTKEERNLNTFLLALKDDAKD