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CSPI07G13380 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G13380
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
Genome locationChr7:11836996..11837328
RNA-Seq ExpressionCSPI07G13380
SyntenyCSPI07G13380
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054551.1 reverse transcriptase [Cucumis melo var. makuwa]7.5e-0575.61Show/hide
Query:  AVTGKDTSDKGKDVVPDEEEIPSLYTSAARLMVVEESVLEV
        AVT K+TSDKGKDVV  E+EIPS  TSAARLMVVEES +E+
Subjt:  AVTGKDTSDKGKDVVPDEEEIPSLYTSAARLMVVEESVLEV
TrEMBL top hitse value%identityAlignment
A0A5A7ULZ0 Reverse transcriptase3.7e-0575.61Show/hide
Query:  AVTGKDTSDKGKDVVPDEEEIPSLYTSAARLMVVEESVLEV
        AVT K+TSDKGKDVV  E+EIPS  TSAARLMVVEES +E+
Subjt:  AVTGKDTSDKGKDVVPDEEEIPSLYTSAARLMVVEESVLEV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGCTGTGACCGGCAAGGACACCTCTGACAAGGGAAAGGATGTTGTGCCTGATGAAGAGGAGATCCCATCCCTATACACCTCGGCTGCTCGTTTGATGGTTGT
CGAAGAAAGTGTGCTTGAAGTACGCGTTAACTGCCCTTTCCAAACAACAGAAACTACTAAGAAGTTCGGCCCATCGACGACCGAATTTTTGGCCAATTATGCCACGAAGA
ACGTCAAGATTTTTTTCCGAGATTGGGGGCAACGAGGCATTCAAGATACATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGCTGTGACCGGCAAGGACACCTCTGACAAGGGAAAGGATGTTGTGCCTGATGAAGAGGAGATCCCATCCCTATACACCTCGGCTGCTCGTTTGATGGTTGT
CGAAGAAAGTGTGCTTGAAGTACGCGTTAACTGCCCTTTCCAAACAACAGAAACTACTAAGAAGTTCGGCCCATCGACGACCGAATTTTTGGCCAATTATGCCACGAAGA
ACGTCAAGATTTTTTTCCGAGATTGGGGGCAACGAGGCATTCAAGATACATAA
Protein sequenceShow/hide protein sequence
MKEAVTGKDTSDKGKDVVPDEEEIPSLYTSAARLMVVEESVLEVRVNCPFQTTETTKKFGPSTTEFLANYATKNVKIFFRDWGQRGIQDT