CuGenDBv2

Gene ID	CSPI07G13600
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Photosystem II protein D1
Genome location	Chr7:12123559..12123972
RNA-Seq Expression	CSPI07G13600
Synteny	CSPI07G13600
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0042170 - plastid membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAB4265712.1 unnamed protein product [Prunus armeniaca]

3.3e-35

86.81

Show/hide

Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH
        MRFIVALLIASLFVDKA+SELSFIPRHNLYPCASYSPGVRSQKYSHP+PLTSIPRASYPFSFDHGG AS+NRKTHIGFRD   AR     H
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH

GFP87818.1 hypothetical protein PHJA_000925500 [Phtheirospermum japonicum]

6.9e-33

87.06

Show/hide

Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVAR
        MRFIVALLIASLFVDKANSELSFI RHNL PCASYSPGVRSQKYSHP PLTSIPRASYPFS +HGGGA QNRKTHIGFRD   ++
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVAR

KAF3952386.1 hypothetical protein CMV_022051 [Castanea mollissima]

3.1e-33

84.62

Show/hide

Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH
        MRFIVALLIASLFV+KA+SELSFIPRHNLYPCAS SPGVRSQKYSHP+PLTSIPRASYPFSFDHGG ASQNRKT+IGFRD   AR     H
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH

KAF6138347.1 hypothetical protein GIB67_033149 [Kingdonia uniflora]

2.5e-35

86.81

Show/hide

Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH
        MRFIVALLIASLFVDKA+SELSF+PRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASY FSFDHGGGAS+NRKTHIGFRD   AR     H
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH

KAF6154923.1 hypothetical protein GIB67_018360 [Kingdonia uniflora]

1.9e-35

86.81

Show/hide

Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH
        MRFIVALLIASLFVDKA+SELSF+PRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASY FSFDHGGGAS+NRKTHIGFRD   AR     H
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6M9 Uncharacterized protein

8.8e-42

92.63

Show/hide

Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAHQLSK
        MRFIVALLIA LFVDKAN +LSFIPRHNLYPCASYSPGVRSQKY+HPHPL SIPRASYPFSFDH  GASQNRKTHIGFRDKSVARAKPIAHQLSK
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAHQLSK

A0A6A1UFX0 Uncharacterized protein ycf68

4.4e-33

83.52

Show/hide

Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH
        MRFIVALLIASLFV+KA+SELSFIPRHNLYPCAS SPGVRSQKYSHP+PLTSIP+ASYPFSFDHGG ASQNRKT+IGFRD   AR     H
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH

A0A6J5TZG0 Uncharacterized protein ycf68

1.6e-35

86.81

Show/hide

Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH
        MRFIVALLIASLFVDKA+SELSFIPRHNLYPCASYSPGVRSQKYSHP+PLTSIPRASYPFSFDHGG AS+NRKTHIGFRD   AR     H
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH

A0A7J7L728 Uncharacterized protein ycf68

1.2e-35

86.81

Show/hide

Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH
        MRFIVALLIASLFVDKA+SELSF+PRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASY FSFDHGGGAS+NRKTHIGFRD   AR     H
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH

A0A7J7MJ57 Uncharacterized protein ycf68

9.4e-36

86.81

Show/hide

Query:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH
        MRFIVALLIASLFVDKA+SELSF+PRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASY FSFDHGGGAS+NRKTHIGFRD   AR     H
Subjt:  MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCC
TGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCAAGTCAAAATAGAAAAA
CTCACATTGGGTTTAGGGATAAGAGTGTAGCTCGAGCTAAACCTATAGCCCACCAATTGTCTAAATAA

mRNA sequence

Show/hide mRNA sequence

TCCCCCCCAAAGGGCAGGTTCTTACACGTTACTCACCCGTCCGCCACTGGAAATACTACTTCCCGTCCGACTTGCATGTGTTAAGCATGCCGTCAGCGTTCATCCTGAGC
CAGGATCGAAATCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCAT
GCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGGAGCA
AGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAAGAGTGTAGCTCGAGCTAAACCTATAGCCCACCAATTGTCTAAATAA

Protein sequence

Show/hide protein sequence

MRFIVALLIASLFVDKANSELSFIPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYPFSFDHGGGASQNRKTHIGFRDKSVARAKPIAHQLSK

CSPI07G13600 (gene) of Cucumber (PI 183967) v1 genome