; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G13810 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G13810
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr7:12335048..12336237
RNA-Seq ExpressionCSPI07G13810
SyntenyCSPI07G13810
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0043489 - RNA stabilization (biological process)
GO:0009536 - plastid (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064575.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]6.3e-4490.29Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MKAKGI+PN  ACNASLYSLAEMGRLREAK  FNGLRENGLAPDSVTYNMMMKCYSKVGQVDE VNLL EMIRNGCE DVIVVNSLIDSLYKAGRVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMW
        QM+
Subjt:  QMW

KAE8649937.1 hypothetical protein Csa_012376 [Cucumis sativus]6.3e-4490.29Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MKAKGI+PN  ACNASLYSLAEMGRLREAK  FNGLRENGLAPDSVTYNMMMKCYSKVGQVDE VNLL EMIRNGCE DVIVVNSLIDSLYKAGRVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMW
        QM+
Subjt:  QMW

XP_004145582.3 pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Cucumis sativus]6.3e-4490.29Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MKAKGI+PN  ACNASLYSLAEMGRLREAK  FNGLRENGLAPDSVTYNMMMKCYSKVGQVDE VNLL EMIRNGCE DVIVVNSLIDSLYKAGRVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMW
        QM+
Subjt:  QMW

XP_008452843.1 PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X1 [Cucumis melo]6.3e-4490.29Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MKAKGI+PN  ACNASLYSLAEMGRLREAK  FNGLRENGLAPDSVTYNMMMKCYSKVGQVDE VNLL EMIRNGCE DVIVVNSLIDSLYKAGRVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMW
        QM+
Subjt:  QMW

XP_016901317.1 PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X2 [Cucumis melo]6.3e-4490.29Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MKAKGI+PN  ACNASLYSLAEMGRLREAK  FNGLRENGLAPDSVTYNMMMKCYSKVGQVDE VNLL EMIRNGCE DVIVVNSLIDSLYKAGRVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMW
        QM+
Subjt:  QMW

TrEMBL top hitse value%identityAlignment
A0A1S3BUU7 pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X13.0e-4490.29Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MKAKGI+PN  ACNASLYSLAEMGRLREAK  FNGLRENGLAPDSVTYNMMMKCYSKVGQVDE VNLL EMIRNGCE DVIVVNSLIDSLYKAGRVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMW
        QM+
Subjt:  QMW

A0A1S4DZB2 pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X23.0e-4490.29Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MKAKGI+PN  ACNASLYSLAEMGRLREAK  FNGLRENGLAPDSVTYNMMMKCYSKVGQVDE VNLL EMIRNGCE DVIVVNSLIDSLYKAGRVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMW
        QM+
Subjt:  QMW

A0A5D3D8X9 Pentatricopeptide repeat-containing protein3.0e-4490.29Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MKAKGI+PN  ACNASLYSLAEMGRLREAK  FNGLRENGLAPDSVTYNMMMKCYSKVGQVDE VNLL EMIRNGCE DVIVVNSLIDSLYKAGRVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMW
        QM+
Subjt:  QMW

A0A6J1FAM6 pentatricopeptide repeat-containing protein At4g31850, chloroplastic9.7e-4385.44Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MKA+GI+PN  ACNASLYSLAE GRLREAK  FNGLRENGLAPDSVTYNMMMKCYSKVGQVD+ VNLL+EMI+NGCE DVIVVNSLIDSLYKAGRVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMW
        +M+
Subjt:  QMW

A0A6J1ILH6 pentatricopeptide repeat-containing protein At4g31850, chloroplastic9.7e-4385.44Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MKA+GI+PN  ACNASLYSLAE GRLREAK  FNGLRENGLAPDSVTYNMMMKCYSKVGQVD+ VNLL+EMI+NGCE DVIVVNSLIDSLYKAGRVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMW
        +M+
Subjt:  QMW

SwissProt top hitse value%identityAlignment
Q0WPZ6 Pentatricopeptide repeat-containing protein At2g171401.0e-1235.4Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        M  KGI P+  + N  +  L ++G L +AK     ++ NG+ PD+VTY  ++  Y  VG+VD   +LL EM+RN C  +    N L+ SL+K GR+ E  
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMWVKKVRKLDDE
        ++    +RK++++
Subjt:  QMWVKKVRKLDDE

Q3E9F0 Pentatricopeptide repeat-containing protein At5g184756.6e-1234.31Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MK  G  PN    +A +    ++G+++EAK+TF+ +++ GL  D+V Y  +M C+ + G+ DE + LL EM  + C  D +  N ++  L   GR +E  
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QM
        QM
Subjt:  QM

Q9LYZ9 Pentatricopeptide repeat-containing protein At5g028601.1e-1130.89Show/hide
Query:  AKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEWQM
        AKGI P+  + N  +Y+     R+R+A + F+ +R +G+ PD +TYN  +  Y+     +E + ++  MI++GC  +    NS++D   K  R DE  ++
Subjt:  AKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEWQM

Query:  WVKKVRKLDDEENLTKKGSEERI
        +V+ +R LD       KG + R+
Subjt:  WVKKVRKLDDEENLTKKGSEERI

Q9SZ52 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic7.7e-3750Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MK KGI PN  ACNASLYSLA+ GR REAK+ F GL++ GL PDSVTYNMMMKCYSKVG++DE + LL EM+ NGCE DVIVVNSLI++LYKA RVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMWVK-KVRKLDDE--------ENLTKKGS-EERIEIWKGFLGEVERGGERGRTA----------NNHLKLSAKMWNKLLKLRC
        +M+++ K  KL             L K G  +E IE+++G    V++G                 N+ + L+ KM  K++ + C
Subjt:  QMWVK-KVRKLDDE--------ENLTKKGS-EERIEIWKGFLGEVERGGERGRTA----------NNHLKLSAKMWNKLLKLRC

Q9ZU27 Pentatricopeptide repeat-containing protein At1g51965, mitochondrial6.6e-1234.74Show/hide
Query:  KGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDE
        KG++ +T   N    +L ++ ++      F  ++++G +PD  TYN+++  + +VG+VDE +N+  E+ R+ C+ D+I  NSLI+ L K G VDE
Subjt:  KGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDE

Arabidopsis top hitse value%identityAlignment
AT1G51965.1 ABA Overly-Sensitive 54.7e-1334.74Show/hide
Query:  KGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDE
        KG++ +T   N    +L ++ ++      F  ++++G +PD  TYN+++  + +VG+VDE +N+  E+ R+ C+ D+I  NSLI+ L K G VDE
Subjt:  KGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDE

AT2G17140.1 Pentatricopeptide repeat (PPR) superfamily protein7.2e-1435.4Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        M  KGI P+  + N  +  L ++G L +AK     ++ NG+ PD+VTY  ++  Y  VG+VD   +LL EM+RN C  +    N L+ SL+K GR+ E  
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMWVKKVRKLDDE
        ++    +RK++++
Subjt:  QMWVKKVRKLDDE

AT4G31850.1 proton gradient regulation 35.5e-3850Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MK KGI PN  ACNASLYSLA+ GR REAK+ F GL++ GL PDSVTYNMMMKCYSKVG++DE + LL EM+ NGCE DVIVVNSLI++LYKA RVDE W
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QMWVK-KVRKLDDE--------ENLTKKGS-EERIEIWKGFLGEVERGGERGRTA----------NNHLKLSAKMWNKLLKLRC
        +M+++ K  KL             L K G  +E IE+++G    V++G                 N+ + L+ KM  K++ + C
Subjt:  QMWVK-KVRKLDDE--------ENLTKKGS-EERIEIWKGFLGEVERGGERGRTA----------NNHLKLSAKMWNKLLKLRC

AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein8.0e-1330.89Show/hide
Query:  AKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEWQM
        AKGI P+  + N  +Y+     R+R+A + F+ +R +G+ PD +TYN  +  Y+     +E + ++  MI++GC  +    NS++D   K  R DE  ++
Subjt:  AKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEWQM

Query:  WVKKVRKLDDEENLTKKGSEERI
        +V+ +R LD       KG + R+
Subjt:  WVKKVRKLDDEENLTKKGSEERI

AT5G18475.1 Pentatricopeptide repeat (PPR) superfamily protein4.7e-1334.31Show/hide
Query:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW
        MK  G  PN    +A +    ++G+++EAK+TF+ +++ GL  D+V Y  +M C+ + G+ DE + LL EM  + C  D +  N ++  L   GR +E  
Subjt:  MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEW

Query:  QM
        QM
Subjt:  QM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCTAAAGGAATTATTCCAAATACTGCAGCGTGCAATGCATCATTGTACAGCCTTGCTGAAATGGGGAGGTTAAGAGAAGCAAAAAAAACATTCAATGGGCTTAG
AGAGAATGGTTTAGCTCCAGATTCAGTGACCTATAACATGATGATGAAGTGCTATAGCAAAGTAGGACAAGTAGATGAGGTTGTGAATTTGCTTTATGAGATGATAAGAA
ATGGATGTGAACTTGATGTGATTGTGGTTAACTCTTTGATTGATTCACTTTACAAGGCTGGACGAGTTGATGAAGAATGGCAAATGTGGGTCAAAAAGGTCAGAAAACTT
GACGACGAGGAGAATCTCACGAAGAAGGGCAGCGAAGAGAGGATCGAGATATGGAAAGGGTTTCTTGGAGAGGTGGAACGCGGTGGTGAACGTGGACGGACGGCGAACAA
CCATCTGAAGCTTTCGGCAAAGATGTGGAACAAATTGTTAAAGCTTCGGTGTGGTGGGAAATCCGTGCAAAGAAGGGGAAGACATCGTGCAAGAAGACGAAGAAATGGAG
GATGGAGAGAAATGATAAAGAAAATTTGGGTGAAAAACTGGCTATTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCTAAAGGAATTATTCCAAATACTGCAGCGTGCAATGCATCATTGTACAGCCTTGCTGAAATGGGGAGGTTAAGAGAAGCAAAAAAAACATTCAATGGGCTTAG
AGAGAATGGTTTAGCTCCAGATTCAGTGACCTATAACATGATGATGAAGTGCTATAGCAAAGTAGGACAAGTAGATGAGGTTGTGAATTTGCTTTATGAGATGATAAGAA
ATGGATGTGAACTTGATGTGATTGTGGTTAACTCTTTGATTGATTCACTTTACAAGGCTGGACGAGTTGATGAAGAATGGCAAATGTGGGTCAAAAAGGTCAGAAAACTT
GACGACGAGGAGAATCTCACGAAGAAGGGCAGCGAAGAGAGGATCGAGATATGGAAAGGGTTTCTTGGAGAGGTGGAACGCGGTGGTGAACGTGGACGGACGGCGAACAA
CCATCTGAAGCTTTCGGCAAAGATGTGGAACAAATTGTTAAAGCTTCGGTGTGGTGGGAAATCCGTGCAAAGAAGGGGAAGACATCGTGCAAGAAGACGAAGAAATGGAG
GATGGAGAGAAATGATAAAGAAAATTTGGGTGAAAAACTGGCTATTTTTTTAG
Protein sequenceShow/hide protein sequence
MKAKGIIPNTAACNASLYSLAEMGRLREAKKTFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEVVNLLYEMIRNGCELDVIVVNSLIDSLYKAGRVDEEWQMWVKKVRKL
DDEENLTKKGSEERIEIWKGFLGEVERGGERGRTANNHLKLSAKMWNKLLKLRCGGKSVQRRGRHRARRRRNGGWREMIKKIWVKNWLFF