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CSPI07G14020 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G14020
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionthioredoxin-like protein 4B
Genome locationChr7:12536497..12538946
RNA-Seq ExpressionCSPI07G14020
SyntenyCSPI07G14020
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON66756.1 Thioredoxin-like protein [Parasponia andersonii]4.2e-2398.15Show/hide
Query:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQL YKDV
Subjt:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
XP_004139666.1 thioredoxin-like protein 4B [Cucumis sativus]8.5e-24100Show/hide
Query:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
Subjt:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
XP_031278289.1 thioredoxin-like protein 4B isoform X1 [Pistacia vera]3.2e-2396.3Show/hide
Query:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        TADHTKWVGAFH+KQDF+DVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
Subjt:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
XP_031278292.1 thioredoxin-like protein 4B isoform X2 [Pistacia vera]3.2e-2396.3Show/hide
Query:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        TADHTKWVGAFH+KQDF+DVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
Subjt:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
XP_031278293.1 thioredoxin-like protein 4B isoform X3 [Pistacia vera]3.2e-2396.3Show/hide
Query:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        TADHTKWVGAFH+KQDF+DVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
Subjt:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
TrEMBL top hitse value%identityAlignment
A0A0A0K8A6 Uncharacterized protein3.1e-2496.49Show/hide
Query:  LALTADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        L  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
Subjt:  LALTADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
A0A2P5D0D4 Thioredoxin-like protein2.0e-2398.15Show/hide
Query:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQL YKDV
Subjt:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
A0A2P5FSE9 Thioredoxin-like protein2.0e-2398.15Show/hide
Query:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQL YKDV
Subjt:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
A0A5D2M5Q2 Uncharacterized protein4.5e-2396.3Show/hide
Query:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        TADHTKWVGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQL YKDV
Subjt:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
A0A6P4ATD0 thioredoxin-like protein 4B2.0e-2398.15Show/hide
Query:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQL YKDV
Subjt:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
SwissProt top hitse value%identityAlignment
Q8BUH1 Thioredoxin-like protein 4B9.7e-1561.54Show/hide
Query:  DHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        DHTK+VG+F  KQDFID++E I+RGAM+GKLIV  P+ P+ +PKY L Y+D+
Subjt:  DHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
Q9NX01 Thioredoxin-like protein 4B7.5e-1563.46Show/hide
Query:  DHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        DHTK+VG+F  KQDFID++E I+RGAM+GKLIV  P+ P+ IPKY L Y+D+
Subjt:  DHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP1.4e-2488.89Show/hide
Query:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV
        TADHTKWVGAFH KQDFIDVVEAI+RGAMKGK+IV CP+PPERIPKYQL YKDV
Subjt:  TADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGACTAAAGACAACGATCAATGATGGCTTGGACAACAGCGGTAATGTCGATGGTGAAAAAGTTGGTGGCTTTGATGGCGATCGTCAGAGGCCCATTGCCAGCTA
TGACAGCTGCGAGATTGTTGCAAAACGCCAAATCTTGGATCCTGTTTTAATAGCAAGCGAAACTGTGGAGGACTATAGAATCCAAAAAAAGAAAAGATGGATCTTTAAAT
TAGACCTTGAAAAGCCTTTACAGCATCCCCACTTTGAAGTCCTTGATGATCAGGACTTCCGGATCAGCCCTCTGCTTCAAACACCTGCTGCTTTTGTTTTTGTTTTTGCT
TTTGCTTTTGCTTTGGACAGATTCTTTTTATCTTTTTGTTTGGCTTTGACTGCGGATCATACAAAGTGGGTCGGCGCTTTTCACCAAAAGCAGGATTTTATTGATGTTGT
GGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTCATTGTGAATTGTCCGTTGCCTCCCGAGCGAATTCCAAAATACCAGTTATTCTACAAGGATGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGACTAAAGACAACGATCAATGATGGCTTGGACAACAGCGGTAATGTCGATGGTGAAAAAGTTGGTGGCTTTGATGGCGATCGTCAGAGGCCCATTGCCAGCTA
TGACAGCTGCGAGATTGTTGCAAAACGCCAAATCTTGGATCCTGTTTTAATAGCAAGCGAAACTGTGGAGGACTATAGAATCCAAAAAAAGAAAAGATGGATCTTTAAAT
TAGACCTTGAAAAGCCTTTACAGCATCCCCACTTTGAAGTCCTTGATGATCAGGACTTCCGGATCAGCCCTCTGCTTCAAACACCTGCTGCTTTTGTTTTTGTTTTTGCT
TTTGCTTTTGCTTTGGACAGATTCTTTTTATCTTTTTGTTTGGCTTTGACTGCGGATCATACAAAGTGGGTCGGCGCTTTTCACCAAAAGCAGGATTTTATTGATGTTGT
GGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTCATTGTGAATTGTCCGTTGCCTCCCGAGCGAATTCCAAAATACCAGTTATTCTACAAGGATGTGTAGGAGATGA
ACTGGTGTGTAAAGGCTTCACGTCAAGTTGCCATAACTGAAAGAATGGCTTAAATGAATTGATTTTCCATGAAGAATGTTGCCAAAATGCTCTCGTATCTCCAAATTTCC
TCTGCATTTGAAGTGCTTCAACATTTCTGGTGGTACGCTTGGAATTTGGGAACAGAAGAAAAGTTTGTGTGAGCATTTTTCTTCAGCTACCGATAGAAAATGGGGTTAAG
TTGAGAAAGTTCAGGTTATCTTGTTTCAAGTGGTGAGATTATAGTTCATTCACTCTCTTCATTTGTGGAACTAATTTCCCTTGTGTTAGATTGCTAGTTTGTCAGTGGGA
GATTAATCATGTGTAAAGGCACCTCTTATATTTTTTATTTCGTGAAACACATTAATGAAAATAGTGAATGTTTTCTTCACCTCCAGTTACTTGGAAGCAATAGAATGAAT
GATTAAAAAAGTTCCCTTTTCCTTA
Protein sequenceShow/hide protein sequence
MQGLKTTINDGLDNSGNVDGEKVGGFDGDRQRPIASYDSCEIVAKRQILDPVLIASETVEDYRIQKKKRWIFKLDLEKPLQHPHFEVLDDQDFRISPLLQTPAAFVFVFA
FAFALDRFFLSFCLALTADHTKWVGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLFYKDV