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CSPI07G14030 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G14030
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionthioredoxin-like protein 4B
Genome locationChr7:12544128..12544827
RNA-Seq ExpressionCSPI07G14030
SyntenyCSPI07G14030
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006413 - translational initiation (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575968.1 Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4294.85Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

XP_004139666.1 thioredoxin-like protein 4B [Cucumis sativus]9.3e-45100Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

XP_008447285.1 PREDICTED: thioredoxin-like protein 4B [Cucumis melo]2.7e-4497.94Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEE+QVYVKYFDITLIPSTVFFFNAHHMKMDSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

XP_022152114.1 thioredoxin-like protein 4B [Momordica charantia]6.6e-4394.85Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

XP_022953679.1 thioredoxin-like protein 4B [Cucurbita moschata]1.1e-4294.85Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

TrEMBL top hitse value%identityAlignment
A0A1S3BH38 thioredoxin-like protein 4B1.3e-4497.94Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEE+QVYVKYFDITLIPSTVFFFNAHHMKMDSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

A0A5J5C5Z7 Uncharacterized protein4.8e-3988.66Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLL TLTKK EVDS+IRDTIDKVL+LRFGR SD+VCL LDDIL+K AREVSKFA+VALVDIDSEE+QVYVKYFDITLIPSTVFFFNAHHMKMDSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

A0A6J1DGN8 thioredoxin-like protein 4B3.2e-4394.85Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

A0A6J1GQC5 thioredoxin-like protein 4B5.5e-4394.85Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

A0A6J1JT18 thioredoxin-like protein 4B9.3e-4393.81Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A1.6e-0734.02Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA + LVDI   E+  + K +++    + +FFF   H+ +D G
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

P83877 Thioredoxin-like protein 4A1.6e-0734.02Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA + LVDI   E+  + K +++    + +FFF   H+ +D G
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

Q06819 Spliceosomal protein DIB14.7e-0732.29Show/hide
Query:  SYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        S LL  L     VD  I     +++++RFGR +D  C+++D++L+  A  V  FA + L DID  E+  + + +++T   + +FF++  HM  D G
Subjt:  SYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

Q8BUH1 Thioredoxin-like protein 4B1.6e-2358.76Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MS+LL  LT K EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A++ LVD+D     VY +YFDI+ IPSTVFFFN  HMK+D G
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

Q9NX01 Thioredoxin-like protein 4B9.4e-2458.76Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MS+LL  LT K EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A++ LVD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP8.9e-3876.29Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG
        MSYLL+TLT K E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKFA VALVD+DSE++QVYVKYFDITL PST+FFFNAHHMK+DSG
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSG

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP7.4e-0835.35Show/hide
Query:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSG
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA + LVDI +  +     + +D    PSTV FFF   H+ +D G
Subjt:  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTATCTTCTACGAACCTTAACAAAGAAGGGAGAGGTGGATTCCCTTATTAGGGATACGATTGATAAGGTCCTAATTCTCCGATTTGGGCGGTGTTCTGATTCAGT
TTGTCTCCTCCTTGATGACATTCTTGCTAAGTGCGCACGAGAAGTATCGAAGTTTGCTTCAGTAGCATTGGTTGATATTGATTCGGAGGAAATACAGGTTTATGTCAAGT
ACTTTGACATAACTCTCATACCGTCCACTGTTTTCTTCTTCAATGCCCATCATATGAAGATGGATTCAGGCTACTTGATTCGGGCAGTAGAGAAGCATAGCATCCCTTGC
GATCTATAG
mRNA sequenceShow/hide mRNA sequence
CGTTTAGATTGAATAAGATGTGTGTGAATAGTCTGGAAAAGTTTTACTTGACAACGTTGGGTGTCTTGAAGCTGCTTTAGTTTCTTAAGCTTAAACTTAACTTGTCGACG
TTGCAGGCAAAGGAGGATGAGCTATCTTCTACGAACCTTAACAAAGAAGGGAGAGGTGGATTCCCTTATTAGGGATACGATTGATAAGGTCCTAATTCTCCGATTTGGGC
GGTGTTCTGATTCAGTTTGTCTCCTCCTTGATGACATTCTTGCTAAGTGCGCACGAGAAGTATCGAAGTTTGCTTCAGTAGCATTGGTTGATATTGATTCGGAGGAAATA
CAGGTTTATGTCAAGTACTTTGACATAACTCTCATACCGTCCACTGTTTTCTTCTTCAATGCCCATCATATGAAGATGGATTCAGGCTACTTGATTCGGGCAGTAGAGAA
GCATAGCATCCCTTGCGATCTATAG
Protein sequenceShow/hide protein sequence
MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASVALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGYLIRAVEKHSIPC
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