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CSPI07G14540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G14540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
Genome locationChr7:13055422..13055886
RNA-Seq ExpressionCSPI07G14540
SyntenyCSPI07G14540
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]2.7e-4779.39Show/hide
Query:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
        MSA QY MDLGFT VTRSR+R S I IGSPT+SSTPPR S NLIRPS  V+QMRP ASP SNRESSTPPTTYSQ +T DKRFVPR EIKSYFQK ++VYD
Subjt:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD

Query:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
         IIEPEYQSLTLEE VSKIFP +FNFLP+DL
Subjt:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]3.9e-4676.12Show/hide
Query:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
        MSADQYAMDLGFT VTRSR+R S I IG PT+SSTPPR SANLIRP   VVQM+P ASP SNR+SSTPPTTYSQ +TPDKRFVPR +IK YFQK ++VYD
Subjt:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD

Query:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDLWSI
          IE EYQSLTLEE VSKIFP++FNFLP+DL  I
Subjt:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDLWSI
KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.2e-4880.92Show/hide
Query:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
        +SADQYAMDLGFTTVTR  +RS  I IGSPT+SSTPPR S NLIRPSS VVQMRP ASP SNRESSTPPTTYSQ +TPDKRFVPR EIKSYFQKP++VYD
Subjt:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD

Query:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
         IIE EYQSLT EETVSKIFP++FNFL +DL
Subjt:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]1.1e-4880.92Show/hide
Query:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
        MSADQYAMDLGFTTVTRSR+RSS I+I S T+SSTPPR SANLIRP    VQMRP ASP SNRESSTPPTTYSQ +TPDKRFVPR EIKSYFQK ++VYD
Subjt:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD

Query:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
         IIEPEYQS+TLE+TVSKIF DNFN LP+DL
Subjt:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]5.5e-6497.06Show/hide
Query:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
        MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
Subjt:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD

Query:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDLWSINR
        SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL  +N+
Subjt:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDLWSINR
TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein2.0e-4880.92Show/hide
Query:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
        +SADQYAMDLGFTTVTR  +RS  I IGSPT+SSTPPR S NLIRPSS VVQMRP ASP SNRESSTPPTTYSQ +TPDKRFVPR EIKSYFQKP++VYD
Subjt:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD

Query:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
         IIE EYQSLT EETVSKIFP++FNFL +DL
Subjt:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
A0A5A7V8F3 Uncharacterized protein1.7e-3980Show/hide
Query:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
        MSA QYAMDLGFT V RSRARSS I+IGSPT+SSTP R S NL+RPS EV+QMRP ASP SNRE STPPTTYSQV+TPDKRFVPR EIKSYFQKP++VY+
Subjt:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD

Query:  SIIEPEYQSLTLEET
         IIE EYQSLTLE+T
Subjt:  SIIEPEYQSLTLEET
A0A5D3BM67 Uncharacterized protein5.4e-4980.92Show/hide
Query:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
        MSADQYAMDLGFTTVTRSR+RSS I+I S T+SSTPPR SANLIRP    VQMRP ASP SNRESSTPPTTYSQ +TPDKRFVPR EIKSYFQK ++VYD
Subjt:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD

Query:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
         IIEPEYQS+TLE+TVSKIF DNFN LP+DL
Subjt:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
A0A5D3E4J4 Uncharacterized protein1.9e-4676.12Show/hide
Query:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
        MSADQYAMDLGFT VTRSR+R S I IG PT+SSTPPR SANLIRP   VVQM+P ASP SNR+SSTPPTTYSQ +TPDKRFVPR +IK YFQK ++VYD
Subjt:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD

Query:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDLWSI
          IE EYQSLTLEE VSKIFP++FNFLP+DL  I
Subjt:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDLWSI
E5GCE6 Uncharacterized protein1.3e-4779.39Show/hide
Query:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD
        MSA QY MDLGFT VTRSR+R S I IGSPT+SSTPPR S NLIRPS  V+QMRP ASP SNRESSTPPTTYSQ +T DKRFVPR EIKSYFQK ++VYD
Subjt:  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYD

Query:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
         IIEPEYQSLTLEE VSKIFP +FNFLP+DL
Subjt:  SIIEPEYQSLTLEETVSKIFPDNFNFLPDDL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCAGATCAATATGCCATGGATTTAGGGTTTACCACAGTAACCCGATCCAGAGCAAGATCATCTCGCATACAGATTGGATCTCCCACGAAGTCATCAACTCCACC
AAGGACTTCGGCCAATCTCATTCGTCCTTCAAGTGAAGTCGTTCAGATGAGGCCTCTTGCCTCTCCTTTATCTAATAGGGAGTCTTCTACTCCTCCTACTACTTATTCTC
AAGTTATCACTCCTGATAAAAGATTTGTACCTAGACTCGAAATCAAATCTTATTTTCAAAAACCAGTCATTGTTTATGATTCTATCATAGAACCCGAATATCAAAGTCTC
ACTCTAGAAGAGACAGTGTCAAAGATTTTTCCTGATAACTTTAATTTCCTTCCCGATGACCTGTGGTCAATCAATAGAGTATTTTGGTCAATCAAGGAAATGAAGTGCGG
TGAGCCTGTGGTCAATAGACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCAGATCAATATGCCATGGATTTAGGGTTTACCACAGTAACCCGATCCAGAGCAAGATCATCTCGCATACAGATTGGATCTCCCACGAAGTCATCAACTCCACC
AAGGACTTCGGCCAATCTCATTCGTCCTTCAAGTGAAGTCGTTCAGATGAGGCCTCTTGCCTCTCCTTTATCTAATAGGGAGTCTTCTACTCCTCCTACTACTTATTCTC
AAGTTATCACTCCTGATAAAAGATTTGTACCTAGACTCGAAATCAAATCTTATTTTCAAAAACCAGTCATTGTTTATGATTCTATCATAGAACCCGAATATCAAAGTCTC
ACTCTAGAAGAGACAGTGTCAAAGATTTTTCCTGATAACTTTAATTTCCTTCCCGATGACCTGTGGTCAATCAATAGAGTATTTTGGTCAATCAAGGAAATGAAGTGCGG
TGAGCCTGTGGTCAATAGACTTTGA
Protein sequenceShow/hide protein sequence
MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYDSIIEPEYQSL
TLEETVSKIFPDNFNFLPDDLWSINRVFWSIKEMKCGEPVVNRL