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CSPI07G14750 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G14750
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposable element Tf2
Genome locationChr7:13373022..13373618
RNA-Seq ExpressionCSPI07G14750
SyntenyCSPI07G14750
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]1.2e-5070.83Show/hide
Query:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSST
        MS E+GS RGR NS SS+G+ PSS SN  PSPMSA QYTMDLGFT  TRSR+R S I IG + T+SSTPPRPS NLIRPS         AS  SNR+SST
Subjt:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSST

Query:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMR
        PPTTYSQ VT DKRFVPR +IKSYFQK +VVYDPIIEPEYQSLTLE  +SKIFP DFNFLP+DL+K +
Subjt:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]3.7e-4969.46Show/hide
Query:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIR---------PSASSLSNRDSST
        MS ++G+ RGR NS SS+GN  SS SN +PSPMSADQY MDLGFT  TRSR+R S I IG+  T+SSTPPRPS NLIR         P AS  SNR SST
Subjt:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIR---------PSASSLSNRDSST

Query:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKM
        PPTTYSQ VTPDKRFVPR KIK YFQK +VVYDP IE EYQSLTLE  +SKIFP+DFNFLP+DLRK+
Subjt:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKM

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]5.4e-5671.51Show/hide
Query:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSST
        MS ++GS RGR NS SS+GN P S SN +PSP+SADQY MDLGFTT TR  +RS  I IG + T+SSTPPRPSTNLIRPS         AS  SNR+SST
Subjt:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSST

Query:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKFYEFILVDTK
        PPTTYSQ VTPDKRFVPR +IKSYFQK +VVYDPIIE EYQSLT E T+SKIFP+DFNFL +DLRK RKFYEFIL DTK
Subjt:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKFYEFILVDTK

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]2.9e-4172.46Show/hide
Query:  MSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLI---------RPSASSLSNRDSSTPPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVY
        MSADQY MDLGFTT TRSR+RSS I+I  +ST+SSTPPRPS NLI         RP AS  SNR+SSTPPTTYSQ VTPDKRFVPR +IKSYFQK +VVY
Subjt:  MSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLI---------RPSASSLSNRDSSTPPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVY

Query:  DPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKF
        D IIEPEYQS+TLE T+SKIF D+FN LP+DLRK R F
Subjt:  DPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKF

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]4.7e-5278.57Show/hide
Query:  RANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSSTPPTTYSQVVT
        RANS SSRGN PSS SN +PSPMSADQY MDLGFTT TRSRARSS IQIG + TKSSTPPR S NLIRPS         AS LSNR+SSTPPTTYSQV+T
Subjt:  RANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSSTPPTTYSQVVT

Query:  PDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDL
        PDKRFVPR +IKSYFQK V+VYD IIEPEYQSLTLE T+SKIFPD+FNFLPDDL
Subjt:  PDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDL

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein2.6e-5671.51Show/hide
Query:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSST
        MS ++GS RGR NS SS+GN P S SN +PSP+SADQY MDLGFTT TR  +RS  I IG + T+SSTPPRPSTNLIRPS         AS  SNR+SST
Subjt:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSST

Query:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKFYEFILVDTK
        PPTTYSQ VTPDKRFVPR +IKSYFQK +VVYDPIIE EYQSLT E T+SKIFP+DFNFL +DLRK RKFYEFIL DTK
Subjt:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKFYEFILVDTK

A0A5A7V8F3 Uncharacterized protein1.1e-3869.59Show/hide
Query:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSST
        MS ++GS RGR NS S + N PSS SN +PSPMSA QY MDLGFT   RSRARSSDI+IG + T+SSTP RPSTNL+RPS         AS  SNR+ ST
Subjt:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSST

Query:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYT
        PPTTYSQVVTPDKRFVPR +IKSYFQK +VVY+PIIE EYQSLTLE T
Subjt:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYT

A0A5D3BM67 Uncharacterized protein1.4e-4172.46Show/hide
Query:  MSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLI---------RPSASSLSNRDSSTPPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVY
        MSADQY MDLGFTT TRSR+RSS I+I  +ST+SSTPPRPS NLI         RP AS  SNR+SSTPPTTYSQ VTPDKRFVPR +IKSYFQK +VVY
Subjt:  MSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLI---------RPSASSLSNRDSSTPPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVY

Query:  DPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKF
        D IIEPEYQS+TLE T+SKIF D+FN LP+DLRK R F
Subjt:  DPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKF

A0A5D3E4J4 Uncharacterized protein1.8e-4969.46Show/hide
Query:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIR---------PSASSLSNRDSST
        MS ++G+ RGR NS SS+GN  SS SN +PSPMSADQY MDLGFT  TRSR+R S I IG+  T+SSTPPRPS NLIR         P AS  SNR SST
Subjt:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIR---------PSASSLSNRDSST

Query:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKM
        PPTTYSQ VTPDKRFVPR KIK YFQK +VVYDP IE EYQSLTLE  +SKIFP+DFNFLP+DLRK+
Subjt:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKM

E5GCE6 Uncharacterized protein5.6e-5170.83Show/hide
Query:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSST
        MS E+GS RGR NS SS+G+ PSS SN  PSPMSA QYTMDLGFT  TRSR+R S I IG + T+SSTPPRPS NLIRPS         AS  SNR+SST
Subjt:  MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSST

Query:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMR
        PPTTYSQ VT DKRFVPR +IKSYFQK +VVYDPIIEPEYQSLTLE  +SKIFP DFNFLP+DL+K +
Subjt:  PPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCTAGGGGCAATCACCCATCTTCTTATTCTAACCTTTCACCCTCACCAATGAGTGC
AGATCAATACACCATGGATTTAGGGTTTACCACGACAACCAGATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACGAAGTCATCAACTCCACCAAGGC
CTTCGACTAATCTTATTCGTCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTACTCCTCCTACTACTTATTCGCAAGTTGTCACTCCAGATAAACGGTTTGTACCA
AGATCGAAAATCAAATCTTATTTTCAAAAATTAGTTGTTGTCTATGATCCTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAATATACAATGTCAAAGATTTTCCC
TGACGACTTCAATTTTCTTCCTGATGACCTCAGAAAAATGAGAAAATTTTATGAGTTCATCTTAGTTGACACCAAATCAGTTGAAATAACTCATGTTCCAGACAAAAACG
ACTCTTCAAAGATTGCTTATTCAAAACTAAAAATTTTAAAGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCTAGGGGCAATCACCCATCTTCTTATTCTAACCTTTCACCCTCACCAATGAGTGC
AGATCAATACACCATGGATTTAGGGTTTACCACGACAACCAGATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACGAAGTCATCAACTCCACCAAGGC
CTTCGACTAATCTTATTCGTCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTACTCCTCCTACTACTTATTCGCAAGTTGTCACTCCAGATAAACGGTTTGTACCA
AGATCGAAAATCAAATCTTATTTTCAAAAATTAGTTGTTGTCTATGATCCTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAATATACAATGTCAAAGATTTTCCC
TGACGACTTCAATTTTCTTCCTGATGACCTCAGAAAAATGAGAAAATTTTATGAGTTCATCTTAGTTGACACCAAATCAGTTGAAATAACTCATGTTCCAGACAAAAACG
ACTCTTCAAAGATTGCTTATTCAAAACTAAAAATTTTAAAGCAATGA
Protein sequenceShow/hide protein sequence
MLMSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIGYNSTKSSTPPRPSTNLIRPSASSLSNRDSSTPPTTYSQVVTPDKRFVP
RSKIKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKFYEFILVDTKSVEITHVPDKNDSSKIAYSKLKILKQ