; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G15000 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G15000
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationChr7:13659867..13661237
RNA-Seq ExpressionCSPI07G15000
SyntenyCSPI07G15000
Gene Ontology termsNA
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN76473.1 hypothetical protein VITISV_016007 [Vitis vinifera]2.1e-6339.29Show/hide
Query:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQP-------------------------PRRIPH-
        Y ARLVAKGF QY GV+F +TFS V+K+S IR++ +L ++ +W +RQ+DFNNAFLN  + E  Y+SQP                         PR   H 
Subjt:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQP-------------------------PRRIPH-

Query:  ---------YLLSGSTTPLFF------FLCKLTTLSSLKI----------------------------------MLNLGSGILLNQSKYVDDLLFKLQLH
                 ++ S S T LF       FL  L  +  L I                                   L   +G+ L QSKY  DLL K ++H
Subjt:  ---------YLLSGSTTPLFF------FLCKLTTLSSLKI----------------------------------MLNLGSGILLNQSKYVDDLLFKLQLH

Query:  SMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYAD
        S K  P+P     +L  + G    + +LYRST+GALQYLT TR DIA+ VN LSQ+L+ PT  HW A +RVL YL    H G+H   +   +   Y+ AD
Subjt:  SMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYAD

Query:  WASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI
        WAS+IDDR+S   +C                VV RSSTK+EYRALAH S ++ W++ L SELGIS    P+IW DN     LA+N V H++TKHIE+
Subjt:  WASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI

KAA0051519.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.2e-8052.69Show/hide
Query:  LVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPPRRI----PHYLLSGSTTPLFFFLCK-------LTT
        +V KGFHQ+LGVDFFETF+ V+K+S IR++LS+ V+N W+LRQLDFNNAFLN  L E  YM QPP  +    P+Y L+G+ + L   L K       L  
Subjt:  LVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPPRRI----PHYLLSGSTTPLFFFLCK-------LTT

Query:  LSSLKIMLN-----LGSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNT
        L  L   L      L SG +LNQ KY+ DLL KLQL  +K APS  VVGK L    G+P+ +  +YR+T+GALQYLT TR DIAYI+N LSQFL+ PT+ 
Subjt:  LSSLKIMLN-----LGSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNT

Query:  HWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELG
        HW A++ VL YLS TK +G+  Q   D    AYS ADWASNI+DRKSIAA+C                VV RSSTKSEYRALA  ++++ W++QLL EL 
Subjt:  HWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELG

Query:  ISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI
            R  +IW DNIS   LA N V HA+TKHIEI
Subjt:  ISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI

KYP51639.1 hypothetical protein KK1_026523 [Cajanus cajan]7.8e-6345.15Show/hide
Query:  ARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPPRRIPHYLLSGSTTPLFFFLCKLTTLSSLKIMLN
        ARLVAKGF Q  G+D+ ETFS VVKSS IRIIL++ V  +W ++QLD NNAFLN                       +T  L  F+ +L  + SLK +  
Subjt:  ARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPPRRIPHYLLSGSTTPLFFFLCKLTTLSSLKIMLN

Query:  L-----------GSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWH
        L            +G+ L QSKY+ DLL K ++ +    P+P V GKQ +I +G  + N + +R  +GALQYLT TR DIA+ VN LSQF+ +PT  HW 
Subjt:  L-----------GSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWH

Query:  AIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQ
         I+R+L YL  T HY +HI+ S   +   +S ADWA+++DDRKS+A  C                VV+RSST+SEYRALA  + +ITW + LL+EL + Q
Subjt:  AIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQ

Query:  FRAPIIWYDNISVSVLASNLVHHAQTKHIE
         R PI+W DN+S   LASN V HA+TKHIE
Subjt:  FRAPIIWYDNISVSVLASNLVHHAQTKHIE

RVW56208.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]9.3e-6440.43Show/hide
Query:  MNEELAALLNKRTW------------------------------YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLN
        M+EE  AL+  +TW                              Y ARLVAKG+ Q  G DF+ETFS VVK + IR++L++ VS  W +RQLD NNAFLN
Subjt:  MNEELAALLNKRTW------------------------------YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLN

Query:  RALIEEFYMSQPP---RRIPHYLLSGSTTPLFFF--LCKLTTLSSLKIMLNLGSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNL
          L EE YM QPP    +  H L+S     LF    L +L+    +++   +  G+ L++ KY+ DLL K ++   KS P+P + G +LS   G P+ N+
Subjt:  RALIEEFYMSQPP---RRIPHYLLSGSTTPLFFF--LCKLTTLSSLKIMLNLGSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNL

Query:  SLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFCV----------
          YRS VGALQY+T TR +IA+ VN + QF++ P +THW AI+R+L YL+ T   GI ++ S   N V +  ADW S++DDR+S +  CV          
Subjt:  SLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFCV----------

Query:  ------VTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI
              ++RSST++EYR+LA  ++++ W+Q LLSEL       P+IW DNIS   L++N V H++TKH+E+
Subjt:  ------VTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI

RVX14515.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.9e-6440.35Show/hide
Query:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPP---------------------RRIPH-----
        Y ARLVAKGFHQ  G D+FETFS VVK + IR++LSL +S +W +RQLD +NAFLN  L E+ +M+QPP                     ++ PH     
Subjt:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPP---------------------RRIPH-----

Query:  ---------YLLSGSTTPLFFFLCK--------------LTTLSSLKI--------------------------MLNLGSGILLNQSKYVDDLLFKLQLH
                 + +S + T +F +                 +T LSSL I                          +LN GS + L+Q+KY+ DLL    L 
Subjt:  ---------YLLSGSTTPLFFFLCK--------------LTTLSSLKI--------------------------MLNLGSGILLNQSKYVDDLLFKLQLH

Query:  SMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYAD
          KS  SP  VG  LSI+DG+ + + +LYRS VGALQY T TR DIAY VN L QF+ APT+TH  A++RVL YL  +  YG+  Q S   N +AY+ AD
Subjt:  SMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYAD

Query:  WASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRY
        WAS  DDR+S + +C                VV+RSST+SEYR LA+ + ++TW+Q LL EL +  F+ P+++ DN+S + LA+N V H++ KH+EI Y
Subjt:  WASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRY

TrEMBL top hitse value%identityAlignment
A0A2N9HRE1 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-6541.36Show/hide
Query:  MNEELAALLNKRTW------------------------------YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLN
        MN E  ALL  +TW                              Y ARLVAKGFHQ  G+D+ ETFS VVK + +R +LSL +S +W +RQLD  NAFL+
Subjt:  MNEELAALLNKRTW------------------------------YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLN

Query:  RALIEEFYMSQPP----RRIPHYLLSG--STTPLFFFL---CKLTTLSSLKIMLNL-----GSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSI
          L EE YM+QPP     + P+++       T L   L     +  L  L   L +       G+LL+Q KY+ D+L + ++   K   SP      LSI
Subjt:  RALIEEFYMSQPP----RRIPHYLLSG--STTPLFFFL---CKLTTLSSLKIMLNL-----GSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSI

Query:  SDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFCV-
         DG P  + +LYRSTVGALQYL+ TR DIA+ VN LSQF+  PT  HW +++R+L YL  T H+G+ IQ S       ++ ADWA + DDR+S   +C+ 
Subjt:  SDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFCV-

Query:  ---------------VTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRY
                       V RSST++EY+ALA+T+ +I W   LLSELG+S    PIIW DNI  + L+SN V HA+TKH+EI +
Subjt:  ---------------VTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRY

A0A438F867 Retrovirus-related Pol polyprotein from transposon RE24.5e-6440.43Show/hide
Query:  MNEELAALLNKRTW------------------------------YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLN
        M+EE  AL+  +TW                              Y ARLVAKG+ Q  G DF+ETFS VVK + IR++L++ VS  W +RQLD NNAFLN
Subjt:  MNEELAALLNKRTW------------------------------YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLN

Query:  RALIEEFYMSQPP---RRIPHYLLSGSTTPLFFF--LCKLTTLSSLKIMLNLGSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNL
          L EE YM QPP    +  H L+S     LF    L +L+    +++   +  G+ L++ KY+ DLL K ++   KS P+P + G +LS   G P+ N+
Subjt:  RALIEEFYMSQPP---RRIPHYLLSGSTTPLFFF--LCKLTTLSSLKIMLNLGSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNL

Query:  SLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFCV----------
          YRS VGALQY+T TR +IA+ VN + QF++ P +THW AI+R+L YL+ T   GI ++ S   N V +  ADW S++DDR+S +  CV          
Subjt:  SLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFCV----------

Query:  ------VTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI
              ++RSST++EYR+LA  ++++ W+Q LLSEL       P+IW DNIS   L++N V H++TKH+E+
Subjt:  ------VTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI

A0A438JZY3 Retrovirus-related Pol polyprotein from transposon RE19.0e-6540.35Show/hide
Query:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPP---------------------RRIPH-----
        Y ARLVAKGFHQ  G D+FETFS VVK + IR++LSL +S +W +RQLD +NAFLN  L E+ +M+QPP                     ++ PH     
Subjt:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPP---------------------RRIPH-----

Query:  ---------YLLSGSTTPLFFFLCK--------------LTTLSSLKI--------------------------MLNLGSGILLNQSKYVDDLLFKLQLH
                 + +S + T +F +                 +T LSSL I                          +LN GS + L+Q+KY+ DLL    L 
Subjt:  ---------YLLSGSTTPLFFFLCK--------------LTTLSSLKI--------------------------MLNLGSGILLNQSKYVDDLLFKLQLH

Query:  SMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYAD
          KS  SP  VG  LSI+DG+ + + +LYRS VGALQY T TR DIAY VN L QF+ APT+TH  A++RVL YL  +  YG+  Q S   N +AY+ AD
Subjt:  SMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYAD

Query:  WASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRY
        WAS  DDR+S + +C                VV+RSST+SEYR LA+ + ++TW+Q LL EL +  F+ P+++ DN+S + LA+N V H++ KH+EI Y
Subjt:  WASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRY

A0A5D3DKK9 Putative mitochondrial protein1.5e-8052.69Show/hide
Query:  LVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPPRRI----PHYLLSGSTTPLFFFLCK-------LTT
        +V KGFHQ+LGVDFFETF+ V+K+S IR++LS+ V+N W+LRQLDFNNAFLN  L E  YM QPP  +    P+Y L+G+ + L   L K       L  
Subjt:  LVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPPRRI----PHYLLSGSTTPLFFFLCK-------LTT

Query:  LSSLKIMLN-----LGSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNT
        L  L   L      L SG +LNQ KY+ DLL KLQL  +K APS  VVGK L    G+P+ +  +YR+T+GALQYLT TR DIAYI+N LSQFL+ PT+ 
Subjt:  LSSLKIMLN-----LGSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNT

Query:  HWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELG
        HW A++ VL YLS TK +G+  Q   D    AYS ADWASNI+DRKSIAA+C                VV RSSTKSEYRALA  ++++ W++QLL EL 
Subjt:  HWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELG

Query:  ISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI
            R  +IW DNIS   LA N V HA+TKHIEI
Subjt:  ISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI

A0A803PDQ6 Uncharacterized protein2.2e-6641.9Show/hide
Query:  MNEELAALLNKRTWYL------------------------------ARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLN
        MN E  AL N++TW L                              +RLVAKG+ Q  G+D+ +TFS +VK   +R++LSL V N+W ++QLD +NAFLN
Subjt:  MNEELAALLNKRTWYL------------------------------ARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLN

Query:  RALIEEFYMSQPPRRIP----------HYLLSGSTTPLF-FFLCKLTTLSSLK----IMLNLG-------SGILLNQSKYVDDLLFKLQLHSMKSAPSPC
          L E  YM QPP  +           H  L G  T L   F+  L    SLK    I   LG        G+ LNQSKY+ DLL K+ +   KS P+P 
Subjt:  RALIEEFYMSQPPRRIP----------HYLLSGSTTPLF-FFLCKLTTLSSLK----IMLNLG-------SGILLNQSKYVDDLLFKLQLHSMKSAPSPC

Query:  VVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRK
            +LS+ DG P  +++LYRST+GALQYL+ TR D+AYI N LSQFL+APT  HW A +R+L YL  T   GI ++ + + +   Y+ ADWAS IDDR+
Subjt:  VVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRK

Query:  SIAAFC-----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI
        S + +                  VV RSST+SE+RALA+ +T++ W+  LLSEL ISQ + P++W DN  V+ LA+N V HA+ KHIEI
Subjt:  SIAAFC-----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEI

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1611.4e-1439.06Show/hide
Query:  YRSTVGALQYL-TQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAF-------CV----
        Y S VGA+ YL   TR D+A  V  LSQF   P  THW A++RVL YL ST+ YG+    +     V YS ADWA +++ R+S + +       CV    
Subjt:  YRSTVGALQYL-TQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAF-------CV----

Query:  -----VTRSSTKSEYRALAHTSTDITWV
             V  SST+ EY AL+  + +  W+
Subjt:  -----VTRSSTKSEYRALAHTSTDITWV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.2e-2728.85Show/hide
Query:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQP-------------------------PR-----
        Y ARLV KGF Q  G+DF E FS VVK + IR ILSL  S    + QLD   AFL+  L EE YM QP                         PR     
Subjt:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQP-------------------------PR-----

Query:  -----RIPHYLLSGSTTPLFF-------FLCKLTTLSSLKI--------------------MLNLGSG----------------ILLNQSKYVDDLLFKL
             +   YL + S   ++F       F+  L  +  + I                    M +LG                  + L+Q KY++ +L + 
Subjt:  -----RIPHYLLSGSTTPLFF-------FLCKLTTLSSLKI--------------------MLNLGSG----------------ILLNQSKYVDDLLFKL

Query:  QLHSMKSAPSPCV----VGKQLSISDGSPMHNLSL--YRSTVGALQY-LTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFD
         + + K   +P      + K++  +      N++   Y S VG+L Y +  TR DIA+ V  +S+FL  P   HW A++ +L YL  T    +    S D
Subjt:  QLHSMKSAPSPCV----VGKQLSISDGSPMHNLSL--YRSTVGALQY-LTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFD

Query:  FNFVAYSYADWASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHA
             Y+ AD A +ID+RKS   +                  V  S+T++EY A   T  ++ W+++ L ELG+ Q +  +++ D+ S   L+ N ++HA
Subjt:  FNFVAYSYADWASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHA

Query:  QTKHIEIRY
        +TKHI++RY
Subjt:  QTKHIEIRY

P92519 Uncharacterized mitochondrial protein AtMg008101.5e-1933.94Show/hide
Query:  LLSGSTTPLFFFLCKLTTLSSLKIMLNLG--------------SGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGAL
        LL+GS+  L   L  +  LSS   M +LG              SG+ L+Q+KY + +L    +   K   +P  +    S+S  +   + S +RS VGAL
Subjt:  LLSGSTTPLFFFLCKLTTLSSLKIMLNLG--------------SGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGAL

Query:  QYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC----------------VVTRS
        QYLT TR DI+Y VN + Q +  PT   +  ++RVL Y+  T  +G++I  +   N  A+  +DWA     R+S   FC                 V+RS
Subjt:  QYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC----------------VVTRS

Query:  STKSEYRALAHTSTDITW
        ST++EYRALA T+ ++TW
Subjt:  STKSEYRALAHTSTDITW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.6e-5034.84Show/hide
Query:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPPR-----------------------------R
        Y ARLVAKG++Q  G+D+ ETFS V+KS+ IRI+L + V   W +RQLD NNAFL   L ++ YMSQPP                               
Subjt:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPPR-----------------------------R

Query:  IPHYLL------SGSTTPLFFF-----------------------------LCKLTTLSSLK----IMLNLG-------SGILLNQSKYVDDLLFKLQLH
        + +YLL      S S T LF                               L  L+   S+K    +   LG       +G+ L+Q +Y+ DLL +  + 
Subjt:  IPHYLL------SGSTTPLFFF-----------------------------LCKLTTLSSLK----IMLNLG-------SGILLNQSKYVDDLLFKLQLH

Query:  SMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYAD
        + K   +P     +LS+  G+ + + + YR  VG+LQYL  TR DI+Y VN LSQF+  PT  H  A++R+L YL+ T ++GI ++     +  AYS AD
Subjt:  SMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYAD

Query:  WASNIDDRKSIAAFCV----------------VTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRY
        WA + DD  S   + V                V RSST++EYR++A+TS+++ W+  LL+ELGI   R P+I+ DN+  + L +N V H++ KHI I Y
Subjt:  WASNIDDRKSIAAFCV----------------VTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.2e-5133.83Show/hide
Query:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPP---------------------RRIPH-----
        Y ARLVAKG++Q  G+D+ ETFS V+KS+ IRI+L + V   W +RQLD NNAFL   L +E YMSQPP                     ++ P      
Subjt:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPP---------------------RRIPH-----

Query:  ---YLL------SGSTTPLFF------FLCKLTTLSSLKIMLN----------------------------------LGSGILLNQSKYVDDLLFKLQLH
           YLL      S S T LF        +  L  +  + I  N                                  +  G+ L+Q +Y  DLL +  + 
Subjt:  ---YLL------SGSTTPLFF------FLCKLTTLSSLKIMLN----------------------------------LGSGILLNQSKYVDDLLFKLQLH

Query:  SMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYAD
        + K   +P     +L++  G+ + + + YR  VG+LQYL  TR D++Y VN LSQ++  PT+ HW+A++RVL YL+ T  +GI ++     +  AYS AD
Subjt:  SMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYAD

Query:  WASNIDDRKSIAAFCV----------------VTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRY
        WA + DD  S   + V                V RSST++EYR++A+TS+++ W+  LL+ELGI     P+I+ DN+  + L +N V H++ KHI + Y
Subjt:  WASNIDDRKSIAAFCV----------------VTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRY

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.6e-3529.5Show/hide
Query:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPP--------------------------RRIPH
        Y ARLVAKG+ Q  G+DF ETFS V K + +++IL++    ++ L QLD +NAFLN  L EE YM  PP                          +    
Subjt:  YLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPP--------------------------RRIPH

Query:  YLLSGSTTPLFF-------------------FLC-----------------------------KLTTLSSLKIMLNL-----GSGILLNQSKYVDDLLFK
        + L  S T + F                   FLC                             KL  L  LK  L L      +GI + Q KY  DLL +
Subjt:  YLLSGSTTPLFF-------------------FLC-----------------------------KLTTLSSLKIMLNL-----GSGILLNQSKYVDDLLFK

Query:  LQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAY
          L   K +  P       S   G    +   YR  +G L YL  TR DI++ VN LSQF  AP   H  A+ ++L Y+  T   G+      +     +
Subjt:  LQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAY

Query:  SYADWASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIE
        S A + S  D R+S   +C                VV++SS ++EYRAL+  + ++ W+ Q   EL +   +  +++ DN +   +A+N V H +TKHIE
Subjt:  SYADWASNIDDRKSIAAFC----------------VVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIE

ATMG00240.1 Gag-Pol-related retrotransposon family protein9.1e-0938.46Show/hide
Query:  YLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC
        YLT TR D+ + VN LSQF  A       A+ +VL Y+  T   G+    + D    A++ +DWAS  D R+S+  FC
Subjt:  YLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC

ATMG00810.1 DNA/RNA polymerases superfamily protein1.0e-2033.94Show/hide
Query:  LLSGSTTPLFFFLCKLTTLSSLKIMLNLG--------------SGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGAL
        LL+GS+  L   L  +  LSS   M +LG              SG+ L+Q+KY + +L    +   K   +P  +    S+S  +   + S +RS VGAL
Subjt:  LLSGSTTPLFFFLCKLTTLSSLKIMLNLG--------------SGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGAL

Query:  QYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC----------------VVTRS
        QYLT TR DI+Y VN + Q +  PT   +  ++RVL Y+  T  +G++I  +   N  A+  +DWA     R+S   FC                 V+RS
Subjt:  QYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHYGIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFC----------------VVTRS

Query:  STKSEYRALAHTSTDITW
        ST++EYRALA T+ ++TW
Subjt:  STKSEYRALAHTSTDITW

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)2.3e-0437.04Show/hide
Query:  MNEELAALLNKRTWYL------------------------------ARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSL
        M EEL AL   +TW L                              ARLVAKGFHQ  G+ F ET+S VV+++ IR IL++
Subjt:  MNEELAALLNKRTWYL------------------------------ARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAGAACTTGCTGCTTTGCTAAACAAACGAACTTGGTATCTTGCTCGTTTGGTGGCAAAAGGGTTTCATCAATATCTTGGGGTTGACTTTTTTGAGACATTCAG
TTCGGTCGTAAAGTCTTCAATGATTCGGATAATCTTAAGCTTGGTTGTCTCAAATCATTGGGTTCTTCGTCAACTTGACTTCAACAATGCTTTTCTCAATAGAGCACTGA
TAGAGGAATTTTACATGTCACAGCCACCTAGGCGGATACCTCACTATTTATTATCAGGCTCCACAACTCCATTGTTCTTTTTCTTGTGTAAGTTGACGACGTTATCATCA
TTGAAAATAATGCTGAATCTGGGTTCTGGAATTTTACTGAATCAGTCCAAATATGTAGATGACTTATTGTTTAAACTGCAATTACATAGTATGAAGTCTGCCCCTTCTCC
ATGTGTTGTGGGGAAACAATTGTCTATATCTGATGGATCCCCAATGCACAATCTGTCTCTCTATCGAAGCACGGTTGGGGCTCTCCAATACCTTACTCAGACACGCTCGG
ATATTGCATATATTGTCAACCATCTAAGTCAATTTCTTCGGGCTCCTACGAACACTCATTGGCATGCAATTAGGCGAGTATTGTGGTATCTAAGCAGCACCAAGCATTAT
GGTATTCATATTCAACTGAGTTTTGATTTTAATTTTGTAGCCTACTCCTACGCTGATTGGGCATCCAACATAGATGATCGAAAGTCTATTGCTGCTTTCTGTGTTGTCAC
TCGCTCGAGTACTAAGTCTGAATACCGTGCATTGGCTCATACCTCTACTGACATTACTTGGGTTCAACAACTGCTGAGTGAGTTGGGTATTTCCCAATTTCGTGCACCTA
TCATTTGGTATGACAATATTAGTGTCAGCGTTCTTGCATCAAATCTTGTCCATCATGCCCAAACCAAACACATTGAGATAAGGTACTCAGTGGCCAACTTGAAATTCGGT
ATGTTCCCTCTACTGATCAAATCGTTGACTGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAGAACTTGCTGCTTTGCTAAACAAACGAACTTGGTATCTTGCTCGTTTGGTGGCAAAAGGGTTTCATCAATATCTTGGGGTTGACTTTTTTGAGACATTCAG
TTCGGTCGTAAAGTCTTCAATGATTCGGATAATCTTAAGCTTGGTTGTCTCAAATCATTGGGTTCTTCGTCAACTTGACTTCAACAATGCTTTTCTCAATAGAGCACTGA
TAGAGGAATTTTACATGTCACAGCCACCTAGGCGGATACCTCACTATTTATTATCAGGCTCCACAACTCCATTGTTCTTTTTCTTGTGTAAGTTGACGACGTTATCATCA
TTGAAAATAATGCTGAATCTGGGTTCTGGAATTTTACTGAATCAGTCCAAATATGTAGATGACTTATTGTTTAAACTGCAATTACATAGTATGAAGTCTGCCCCTTCTCC
ATGTGTTGTGGGGAAACAATTGTCTATATCTGATGGATCCCCAATGCACAATCTGTCTCTCTATCGAAGCACGGTTGGGGCTCTCCAATACCTTACTCAGACACGCTCGG
ATATTGCATATATTGTCAACCATCTAAGTCAATTTCTTCGGGCTCCTACGAACACTCATTGGCATGCAATTAGGCGAGTATTGTGGTATCTAAGCAGCACCAAGCATTAT
GGTATTCATATTCAACTGAGTTTTGATTTTAATTTTGTAGCCTACTCCTACGCTGATTGGGCATCCAACATAGATGATCGAAAGTCTATTGCTGCTTTCTGTGTTGTCAC
TCGCTCGAGTACTAAGTCTGAATACCGTGCATTGGCTCATACCTCTACTGACATTACTTGGGTTCAACAACTGCTGAGTGAGTTGGGTATTTCCCAATTTCGTGCACCTA
TCATTTGGTATGACAATATTAGTGTCAGCGTTCTTGCATCAAATCTTGTCCATCATGCCCAAACCAAACACATTGAGATAAGGTACTCAGTGGCCAACTTGAAATTCGGT
ATGTTCCCTCTACTGATCAAATCGTTGACTGCCTAA
Protein sequenceShow/hide protein sequence
MNEELAALLNKRTWYLARLVAKGFHQYLGVDFFETFSSVVKSSMIRIILSLVVSNHWVLRQLDFNNAFLNRALIEEFYMSQPPRRIPHYLLSGSTTPLFFFLCKLTTLSS
LKIMLNLGSGILLNQSKYVDDLLFKLQLHSMKSAPSPCVVGKQLSISDGSPMHNLSLYRSTVGALQYLTQTRSDIAYIVNHLSQFLRAPTNTHWHAIRRVLWYLSSTKHY
GIHIQLSFDFNFVAYSYADWASNIDDRKSIAAFCVVTRSSTKSEYRALAHTSTDITWVQQLLSELGISQFRAPIIWYDNISVSVLASNLVHHAQTKHIEIRYSVANLKFG
MFPLLIKSLTA