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CSPI07G15710 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G15710
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr7:14353145..14353534
RNA-Seq ExpressionCSPI07G15710
SyntenyCSPI07G15710
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646295.1 hypothetical protein Csa_016285, partial [Cucumis sativus]7.2e-2996.88Show/hide
Query:  GYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDLS
        GYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGA KNSDKGEIVHGH+LKCALDLDLS
Subjt:  GYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDLS

XP_008449159.1 PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo]8.8e-2766.67Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        +++GYA+ GPFVEALNLFD EMRVSG PTNRYTFPFV+KACGA KNSDKGEIVHG+V+KC LDLDL              +V+TA KVFDDM L   VS
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

XP_011650274.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sativus]2.1e-2868.69Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        +++GYA+LGPFVEALNLFD EMRVSG PTNRYTFPFV+KACGA KNSDKGEIVHGHV+KC LDLDL              +V+TA KVFDDM L  +VS
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

XP_023540099.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita pepo subsp. pepo]5.7e-2663.64Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        +++GYAN GPF EALNL+D EMRV G PTNRYTFPFV+KACGA KN DKG+IVHGHVLKC LDLDL              +V+TA KVFD+M L  +VS
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

XP_038905146.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Benincasa hispida]5.5e-2969.7Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        +++GYANLGPFVEALNLFD EMRVSGAPTNRYTFPFV+KACGA KNSDKG+IVHGHVLKC LDLDL              +V+TA KVFD+M L  +VS
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

TrEMBL top hitse value%identityAlignment
A0A0A0K4V2 Uncharacterized protein5.2e-4196.47Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDLSEVQTASKVFDDMPLIYVV
        MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGA KNSDKGEIVHGH+LKCALDLDLSEVQTASKVFDDMPLIYV+
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDLSEVQTASKVFDDMPLIYVV

A0A0A0L101 Uncharacterized protein1.0e-2868.69Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        +++GYA+LGPFVEALNLFD EMRVSG PTNRYTFPFV+KACGA KNSDKGEIVHGHV+KC LDLDL              +V+TA KVFDDM L  +VS
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

A0A1S3BMB7 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like4.2e-2766.67Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        +++GYA+ GPFVEALNLFD EMRVSG PTNRYTFPFV+KACGA KNSDKGEIVHG+V+KC LDLDL              +V+TA KVFDDM L   VS
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

A0A5A7UCB1 Pentatricopeptide repeat-containing protein4.2e-2766.67Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        +++GYA+ GPFVEALNLFD EMRVSG PTNRYTFPFV+KACGA KNSDKGEIVHG+V+KC LDLDL              +V+TA KVFDDM L   VS
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

A0A6J1I919 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like2.7e-2663.64Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        +++GYAN GPF EALNL+D EMRV G PTNRYTFPFV+KACGA KNS+KG+IVHGHVLKC LDLDL              +V+TA KVFD+M L  +VS
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

SwissProt top hitse value%identityAlignment
Q9FHR3 Putative pentatricopeptide repeat-containing protein At5g375701.6e-0733.33Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMP
        ++KGY+N   F E +++    MR   A  + YTFP VMK C        G  VHG VL+   D D+              ++ +A KVF +MP
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMP

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic6.5e-0938.38Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        M +G+A     V AL L+   + +   P N YTFPFV+K+C   K   +G+ +HGHVLK   DLDL               ++ A KVFD  P   VVS
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

Q9LUS3 Pentatricopeptide repeat-containing protein At3g166105.5e-0834.41Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHV---------LKCALDLDL----SEVQTASKVFDDMP
        M++ YA+     +AL+L+ ++M  SG    +YT+PFV+KAC   +  D G+++H HV           C   +D      E++ A KVFD+MP
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHV---------LKCALDLDL----SEVQTASKVFDDMP

Q9M9E2 Pentatricopeptide repeat-containing protein At1g15510, chloroplastic2.5e-0832.32Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        +V GYA  G F EA+ L+   + V G   + YTFP V++ CG   +  +G+ VH HV++   +LD+              +V++A  +FD MP   ++S
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

Q9MA95 Putative pentatricopeptide repeat-containing protein At3g052406.1e-0730.3Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        M++GY+N  P  +   +F  EM   G   + +TFP+V+KAC   ++   G  VHG V+K   ++++              EV    +VF+D+P   VV+
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.7e-1038.38Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        M +G+A     V AL L+   + +   P N YTFPFV+K+C   K   +G+ +HGHVLK   DLDL               ++ A KVFD  P   VVS
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.8e-0932.32Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        +V GYA  G F EA+ L+   + V G   + YTFP V++ CG   +  +G+ VH HV++   +LD+              +V++A  +FD MP   ++S
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

AT3G05240.1 mitochondrial editing factor 194.4e-0830.3Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS
        M++GY+N  P  +   +F  EM   G   + +TFP+V+KAC   ++   G  VHG V+K   ++++              EV    +VF+D+P   VV+
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMPLIYVVS

AT3G16610.1 pentatricopeptide (PPR) repeat-containing protein3.9e-0934.41Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHV---------LKCALDLDL----SEVQTASKVFDDMP
        M++ YA+     +AL+L+ ++M  SG    +YT+PFV+KAC   +  D G+++H HV           C   +D      E++ A KVFD+MP
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHV---------LKCALDLDL----SEVQTASKVFDDMP

AT5G37570.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.1e-0833.33Show/hide
Query:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMP
        ++KGY+N   F E +++    MR   A  + YTFP VMK C        G  VHG VL+   D D+              ++ +A KVF +MP
Subjt:  MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDL-------------SEVQTASKVFDDMP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGGGGTATGCAAATTTGGGTCCGTTTGTTGAAGCTCTTAACCTATTTGATCATGAAATGCGAGTCAGTGGGGCACCCACAAATCGCTATACATTTCCTTTTGT
GATGAAGGCATGTGGTGCAAAGAAGAACAGTGACAAGGGTGAGATTGTTCATGGACATGTTTTGAAATGTGCGTTGGACTTGGATTTATCTGAAGTTCAAACTGCTAGTA
AAGTGTTTGATGATATGCCTCTGATATACGTTGTGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGGGGTATGCAAATTTGGGTCCGTTTGTTGAAGCTCTTAACCTATTTGATCATGAAATGCGAGTCAGTGGGGCACCCACAAATCGCTATACATTTCCTTTTGT
GATGAAGGCATGTGGTGCAAAGAAGAACAGTGACAAGGGTGAGATTGTTCATGGACATGTTTTGAAATGTGCGTTGGACTTGGATTTATCTGAAGTTCAAACTGCTAGTA
AAGTGTTTGATGATATGCCTCTGATATACGTTGTGAGTTAG
Protein sequenceShow/hide protein sequence
MVKGYANLGPFVEALNLFDHEMRVSGAPTNRYTFPFVMKACGAKKNSDKGEIVHGHVLKCALDLDLSEVQTASKVFDDMPLIYVVS