; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G15760 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G15760
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPSII 6.1 kDa protein
Genome locationChr7:14411431..14412902
RNA-Seq ExpressionCSPI07G15760
SyntenyCSPI07G15760
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]1.1e-6095.65Show/hide
Query:  MAAVTSAAAATVRTSLLQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRTSL+QNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAATVRTSLLQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]1.3e-6499.27Show/hide
Query:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAATVRTSL+QNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]1.3e-6196.38Show/hide
Query:  MAAVTSAAAATVRTSLLQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRTSL+QNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAATVRTSLLQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

XP_031745255.1 photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus]2.1e-6293.79Show/hide
Query:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
        MAAVTSAAAATVRTSL+QNRLLPSASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE
Subjt:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]1.3e-6194.89Show/hide
Query:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA AT RTSL+QNR LP+ASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein6.2e-6599.27Show/hide
Query:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAATVRTSL+QNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein6.4e-6296.38Show/hide
Query:  MAAVTSAAAATVRTSLLQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRTSL+QNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAATVRTSLLQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein5.4e-6195.65Show/hide
Query:  MAAVTSAAAATVRTSLLQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRTSL+QNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAATVRTSLLQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein2.5e-5889.78Show/hide
Query:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAATVR+SL+QNR LP+ASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVF  IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

A0A6J1JTT6 PSII 6.1 kDa protein1.1e-5689.05Show/hide
Query:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAATVR+SL+QNR  P+ASPAPFLLGLPAL KKG VRCSMEGK NGEVENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVF  IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic3.9e-3261.87Show/hide
Query:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPF
        MA+ T A+A+TV  +     L P+ + +  +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+STEGTGLPF
Subjt:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        GLSNNLLGWIL GVF LIW F+ VYTS+LEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic4.9e-3561.43Show/hide
Query:  MAAVTSAAAATV--RTSLLQN-RLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP
        MA +T++++A++  R SL+ N R+  S+SP   +LGLP++ K+  V CS+E K +      ++N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLP
Subjt:  MAAVTSAAAATV--RTSLLQN-RLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVF LIWA Y VY S LEEDEESGLSL
Subjt:  FGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic1.8e-2152.94Show/hide
Query:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGG--VRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MA V++AAA    TS++   +L  A P    LGLP +  +    VRC+   +        ++  G GASL+A A  A   +PAMALVDER+STEGTGL  
Subjt:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGG--VRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESG
        GLSNNLLGWILLGVF LIW+ Y +YTS LEEDEESG
Subjt:  GLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.6e-0940Show/hide
Query:  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE--EDEESGLSL
        S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVF  +WA + +    L   ED + GL L
Subjt:  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W2.8e-3361.87Show/hide
Query:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPF
        MA+ T A+A+TV  +     L P+ + +  +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+STEGTGLPF
Subjt:  MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
        GLSNNLLGWIL GVF LIW F+ VYTS+LEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCTGCCACTGTCCGCACTTCTTTGTTGCAGAACCGCCTTCTGCCGTCGGCTTCACCCGCCCCTTTCCTTCTTGGGTTACCTGCCTT
GGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAGAACAAATCAAGCAACTTGGGAATGGGGGCATCGTTGATAGCTGCGGCGTGTG
CTGCAACGATGTCAAGCCCGGCGATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTG
GGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTGGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
TGGTTATAAAAGGATGATAGAACACGTTTAAGAAGGTGATTGGTGGAAGGTAGATAAAGGATATGAAGGAAATGCTATGGTTGGCCCTCTCTCTCTATCTACCCTTTGTG
TGGTGCCACTCAAAACCCAACAAATAATATTAATCCTTTACAAACCCTCCCTTTGATCTCCACTGATCTCCAAATTCCCAATTTCTTGTTTTTTTCTCCCTTCAAAATTT
GAAGACCAAATAAATCTAATGGCCGCCGTCACCTCCGCCGCCGCTGCCACTGTCCGCACTTCTTTGTTGCAGAACCGCCTTCTGCCGTCGGCTTCACCCGCCCCTTTCCT
TCTTGGGTTACCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAGAACAAATCAAGCAACTTGGGAATGGGGGCATCGT
TGATAGCTGCGGCGTGTGCTGCAACGATGTCAAGCCCGGCGATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCATTTGGTTTGAGCAACAATCTT
CTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTGGAAGAGGATGAAGAATCTGGCTTATCTCTTTAAGCCAACAT
TTCCCCATCTTACTATTATTAATTATCGCTACTTTTGTTGTTGTGGATATTTTGCCTTTGGCTTGAATTGTGTAGAAGCTTTTGAATTCATATCATACAAGCCTTTTGTT
GGGTATCAATGTAGAAAGCAGTGAATGTGATTCATAACTATGCGTCATCGTTTCATTTCTCTGATCCTTTTTTCTGTATCATAAATTACCATTAAGTTTTTGAAATCTAA
GTTTATAAAACTTTTTTTC
Protein sequenceShow/hide protein sequence
MAAVTSAAAATVRTSLLQNRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILL
GVFALIWAFYIVYTSTLEEDEESGLSL