CuGenDBv2

Gene ID	CSPI07G15970
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	transcription factor E2FB isoform X1
Genome location	Chr7:14624243..14628434
RNA-Seq Expression	CSPI07G15970
Synteny	CSPI07G15970
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0007049 - cell cycle (biological process) GO:0005634 - nucleus (cellular component) GO:0005667 - transcription factor complex (cellular component) GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061728.1 transcription factor E2FB isoform X2 [Cucumis melo var. makuwa]

4.7e-36

91.86

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Query:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF
        MS SRPPNSSGHLP QI HSLKRQLP SS+KPPFASPGDYHRFAPDSRLADQE DAIV+KSPQLKRKSEVADYEAESTDRAIGPRF
Subjt:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF

KGN44775.1 hypothetical protein Csa_016105 [Cucumis sativus]

1.3e-41

100

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Query:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRFVR
        MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRFVR
Subjt:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRFVR

XP_004140164.2 transcription factor E2FB isoform X2 [Cucumis sativus]

1.1e-35

90.7

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Query:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF
        MS SRPPNSSGHLP QI HSLKRQLP SSMKPPFAS GDYHRF PDSRLADQEPDAI++KSPQLKRKSEVADYEAESTDRAIGPRF
Subjt:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF

XP_008449588.1 PREDICTED: transcription factor E2FB isoform X1 [Cucumis melo]

4.7e-36

91.86

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Query:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF
        MS SRPPNSSGHLP QI HSLKRQLP SS+KPPFASPGDYHRFAPDSRLADQE DAIV+KSPQLKRKSEVADYEAESTDRAIGPRF
Subjt:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF

XP_008449589.1 PREDICTED: transcription factor E2FB isoform X2 [Cucumis melo]

4.7e-36

91.86

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Query:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF
        MS SRPPNSSGHLP QI HSLKRQLP SS+KPPFASPGDYHRFAPDSRLADQE DAIV+KSPQLKRKSEVADYEAESTDRAIGPRF
Subjt:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4W8 Uncharacterized protein

6.2e-42

100

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Query:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRFVR
        MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRFVR
Subjt:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRFVR

A0A0A0KEF6 Uncharacterized protein

3.5e-37

90.91

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Query:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRFVR
        MS SRPPNSSGHLP QI HSLKRQLP SSMKPPFAS GDYHRF PDSRLADQEPDAI++KSPQLKRKSEVADYEAESTDRAIGPRFVR
Subjt:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRFVR

A0A1S3BLR6 transcription factor E2FB isoform X2

2.3e-36

91.86

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Query:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF
        MS SRPPNSSGHLP QI HSLKRQLP SS+KPPFASPGDYHRFAPDSRLADQE DAIV+KSPQLKRKSEVADYEAESTDRAIGPRF
Subjt:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF

A0A1S3BNB0 transcription factor E2FB isoform X1

2.3e-36

91.86

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Query:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF
        MS SRPPNSSGHLP QI HSLKRQLP SS+KPPFASPGDYHRFAPDSRLADQE DAIV+KSPQLKRKSEVADYEAESTDRAIGPRF
Subjt:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF

A0A5A7V2C5 Transcription factor E2FB isoform X2

2.3e-36

91.86

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Query:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF
        MS SRPPNSSGHLP QI HSLKRQLP SS+KPPFASPGDYHRFAPDSRLADQE DAIV+KSPQLKRKSEVADYEAESTDRAIGPRF
Subjt:  MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRF

SwissProt top hits

e value

%identity

Alignment

Q9FV71 Transcription factor E2FB

5.9e-05

46.34

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Query:  SGHLPHQITHSLKRQL--PLSSMKPPFASPGDYHRF-APDSR----LADQ-EPDAIVLKSPQLKRKSEVADYEAESTDRAIG
        S  +P Q   S KRQL   LSSMKPP  +PG+YHRF A ++R    +ADQ   DAIV+KS  LKRK+++ +   E  +   G
Subjt:  SGHLPHQITHSLKRQL--PLSSMKPPFASPGDYHRF-APDSR----LADQ-EPDAIVLKSPQLKRKSEVADYEAESTDRAIG

Arabidopsis top hits

e value

%identity

Alignment

AT5G22220.2 E2F transcription factor 1

4.2e-06

46.34

Show/hide

Query:  SGHLPHQITHSLKRQL--PLSSMKPPFASPGDYHRF-APDSR----LADQ-EPDAIVLKSPQLKRKSEVADYEAESTDRAIG
        S  +P Q   S KRQL   LSSMKPP  +PG+YHRF A ++R    +ADQ   DAIV+KS  LKRK+++ +   E  +   G
Subjt:  SGHLPHQITHSLKRQL--PLSSMKPPFASPGDYHRF-APDSR----LADQ-EPDAIVLKSPQLKRKSEVADYEAESTDRAIG

AT5G22220.3 E2F transcription factor 1

4.2e-06

46.34

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Query:  SGHLPHQITHSLKRQL--PLSSMKPPFASPGDYHRF-APDSR----LADQ-EPDAIVLKSPQLKRKSEVADYEAESTDRAIG
        S  +P Q   S KRQL   LSSMKPP  +PG+YHRF A ++R    +ADQ   DAIV+KS  LKRK+++ +   E  +   G
Subjt:  SGHLPHQITHSLKRQL--PLSSMKPPFASPGDYHRF-APDSR----LADQ-EPDAIVLKSPQLKRKSEVADYEAESTDRAIG

Sequences

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CDS sequence

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ATGTCGAGTTCTCGACCTCCTAACTCCTCTGGACACCTTCCTCATCAGATCACGCACTCTCTTAAACGCCAACTCCCTTTATCTTCTATGAAACCACCATTTGCATCTCC
TGGGGACTATCACCGCTTCGCTCCCGACTCTCGACTCGCCGATCAAGAACCTGATGCTATCGTACTCAAATCTCCACAATTGAAGCGGAAGAGTGAGGTAGCAGATTATG
AAGCCGAGTCAACTGATAGAGCAATTGGTCCTAGATTCGTGAGGTAG

mRNA sequence

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TGAATTAAAAACGCTCCTTTTGGACACTATCTCTTGAACCACTCCTCCGGTTTTTCACCTTCATATTTAGGCTAAAACCCCAAAACTCCCTCCAGTTTTCCCTCTCTTTC
TCTGATCTTCATAACCCATATTCCCAATCACTCCATCTTCGCTTCCTCTTCTCTTCTGCTTTGCTCTATGTCGAGTTCTCGACCTCCTAACTCCTCTGGACACCTTCCTC
ATCAGATCACGCACTCTCTTAAACGCCAACTCCCTTTATCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCTCCCGACTCTCGACTCGCCGAT
CAAGAACCTGATGCTATCGTACTCAAATCTCCACAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCCGAGTCAACTGATAGAGCAATTGGTCCTAGATTCGTGAG
GTAGTTAACCGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAGGCAAATCAAGGCTTACAAAATACAGTAGATCAGGGCCACAGACTCCCATTTCAAATGT
TGGTTCATCTTCTACAAACAATCTCACTCCAGCTGGTCCATGCCGTTACGATAGTTCTCTTAGTAGCTTGTTACTCCTGAAGACTTTGTTGTAGCTGTCATATATTTCCT
ACTATTGTATGTTCCTAATTTTAGTGATTTTCGTCTAGGTTTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCAGAAGATGGTATTCTTGATCTAAATAAAGCAG
CTGACACGTTGGAGGTTTCTGTGTTTCTAGAACATTACAGACCTCCATTGTGAAGTTCAAGAAGCTGACATTTATTTTTGCTTTAATAGGTACAAAAAAGACGAATATAT
GATATAACAAATGCCCTCAAGGGAATTGTTCTCACAGGAAAGAAGCTTAAGAACAGAATTCAGTGGAAGTATGTATCATGCCATAAATTTTTTTTTGGACTTCCATGGAA
TAATATTAATTAGCATCGCC

Protein sequence

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MSSSRPPNSSGHLPHQITHSLKRQLPLSSMKPPFASPGDYHRFAPDSRLADQEPDAIVLKSPQLKRKSEVADYEAESTDRAIGPRFVR

CSPI07G15970 (gene) of Cucumber (PI 183967) v1 genome