; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G15980 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G15980
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr7:14628563..14629468
RNA-Seq ExpressionCSPI07G15980
SyntenyCSPI07G15980
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064045.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.7e-3447.14Show/hide
Query:  KLMEIQQQQNFLYK-----DKVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFE
        KL E+  Q+  + +      KVGDARKLFGVMKAY ISADS IY                                             G +ETAWELFE
Subjt:  KLMEIQQQQNFLYK-----DKVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFE

Query:  KLSQEGLQPDVVTYKIKIHEFCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYREC
        KLSQEG+QPDVVTY I I+ FCKVGQ D                              +NK  EVVK LHKMVQRDVS  ASICTIV DM CKDEKYREC
Subjt:  KLSQEGLQPDVVTYKIKIHEFCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYREC

Query:  LNLLPRFLVQ
        L+LLPRFL Q
Subjt:  LNLLPRFLVQ

KGN45331.2 hypothetical protein Csa_015776 [Cucumis sativus]1.2e-3248.19Show/hide
Query:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE
        KVGDA+KLF V+K Y ISADS IY                                             GK+ETAWELFEKL QEGLQ DVVTY I IH 
Subjt:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE

Query:  FCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERR
        FCKVGQVD                              SNK  EVVK LHKM+QRD+SPDA  C IV DM  KDEKY+ECL+LLPRFLVQERR
Subjt:  FCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERR

XP_011659273.2 pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sativus]4.0e-3346.35Show/hide
Query:  KDKVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKI
        K KVGDA+KLFGVMK Y +SA+S IY                                             GK+ETAWELFEKLSQEGLQPDVVTY I I
Subjt:  KDKVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKI

Query:  HEFCKVGQVDMS-----------------------------NKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQ
        H FCKVGQVD +                             NKL+EV+K LHKMVQ+DVSP+A+ CTIV DM CKDEKY++ ++LLP+F VQ
Subjt:  HEFCKVGQVDMS-----------------------------NKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQ

XP_038896203.1 pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida]1.5e-3246.88Show/hide
Query:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE
        KVGDA+KLFGVMKAY +  DS IY                                             GK+ETAWELF+KLSQEGLQP+VVTY I IH 
Subjt:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE

Query:  FCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQER
        FC+ GQVD                              SNK KEVV+ LH+MVQRDV PD   CTIV DM CKDEKYRECL+LLPRF VQ+R
Subjt:  FCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQER

XP_038897332.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida]1.2e-3246.35Show/hide
Query:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE
        KVGDA+KLFGVMKAY ++ DS IY                                             G +ETAWELF+KLSQEGLQP+VVTY I IH 
Subjt:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE

Query:  FCKVGQVDM-----------------------------SNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQER
        FC+ GQVD                              SNK KEVV+ LH+MVQRDVSPD   CTIV DM CKDEKYREC++LLPRF VQ+R
Subjt:  FCKVGQVDM-----------------------------SNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQER

TrEMBL top hitse value%identityAlignment
A0A0A0K5M0 Uncharacterized protein5.6e-3348.19Show/hide
Query:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE
        KVGDA+KLF V+K Y ISADS IY                                             GK+ETAWELFEKL QEGLQ DVVTY I IH 
Subjt:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE

Query:  FCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERR
        FCKVGQVD                              SNK  EVVK LHKM+QRD+SPDA  C IV DM  KDEKY+ECL+LLPRFLVQERR
Subjt:  FCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERR

A0A0A0K784 Uncharacterized protein5.6e-3346.32Show/hide
Query:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE
        KVGDA+KLFGVMK Y +SA+S IY                                             GK+ETAWELFEKLSQEGLQPDVVTY I IH 
Subjt:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE

Query:  FCKVGQVDMS-----------------------------NKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQ
        FCKVGQVD +                             NKL+EV+K LHKMVQ+DVSP+A+ CTIV DM CKDEKY++ ++LLP+F VQ
Subjt:  FCKVGQVDMS-----------------------------NKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQ

A0A1S4DYL6 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like1.8e-3144.85Show/hide
Query:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE
        KVGDA+KLF  MKA  ISA+SHIY                                             GK+ETAWELFEKLSQEGLQP+VVTY I IH 
Subjt:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE

Query:  FCKVGQVDM-----------------------------SNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERRG
         C+ GQVD                              SNKL EVV+ LH MV++DV PDA+ C+IV DM CKDEKY+ECL+LLPRF VQ+ +G
Subjt:  FCKVGQVDM-----------------------------SNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERRG

A0A5A7UUW8 Pentatricopeptide repeat-containing protein2.8e-3246.88Show/hide
Query:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE
        KVGDA+KLF  MKA+ I+ +S IY                                             GK+ETAWELFEKLSQEGLQP+VVTY I I  
Subjt:  KVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE

Query:  FCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQER
        FCK G VD                              SNK +EVV+ LHKMVQRDVSPD SICTIV DM CKDEKY+ECL+LLPRF VQER
Subjt:  FCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQER

A0A5D3DRB9 Pentatricopeptide repeat-containing protein2.3e-3447.14Show/hide
Query:  KLMEIQQQQNFLYK-----DKVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFE
        KL E+  Q+  + +      KVGDARKLFGVMKAY ISADS IY                                             G +ETAWELFE
Subjt:  KLMEIQQQQNFLYK-----DKVGDARKLFGVMKAYRISADSHIY---------------------------------------------GKVETAWELFE

Query:  KLSQEGLQPDVVTYKIKIHEFCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYREC
        KLSQEG+QPDVVTY I I+ FCKVGQ D                              +NK  EVVK LHKMVQRDVS  ASICTIV DM CKDEKYREC
Subjt:  KLSQEGLQPDVVTYKIKIHEFCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYREC

Query:  LNLLPRFLVQ
        L+LLPRFL Q
Subjt:  LNLLPRFLVQ

SwissProt top hitse value%identityAlignment
Q9FIT7 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial1.0e-0729.92Show/hide
Query:  NFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDV
        N L+K DKV DA ++F  M+   I+ D   Y          G ++ A  +F+++ +EGL P+V+ Y + +  FC+ G+++ + +L      L +M  + +
Subjt:  NFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDV

Query:  SPDA-SICTIVTDMFCKDEKYRECLNL
         P+A + CTI+ D +CK     E   L
Subjt:  SPDA-SICTIVTDMFCKDEKYRECLNL

Q9FND8 Pentatricopeptide repeat-containing protein At5g404004.6e-0824.16Show/hide
Query:  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKE
        G+ P  +       ++  + ++ +A  L+ +M   R+  D   Y          G+V  A + F ++   G++PD ++Y   I+ +CK G +  S KL  
Subjt:  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKE

Query:  VVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERR
            LH+M+   V PD   C ++ + F ++ +    +N    F+V+ RR
Subjt:  VVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERR

Q9LN69 Putative pentatricopeptide repeat-containing protein At1g192901.3e-0728Show/hide
Query:  KVGDARKLFG-VMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASI
        K+ DARKLF  ++ + R   D + Y          G +  A+ L ++++ +G+ P++VTY   I   CK+G VD + +L      LHK+ Q+ ++P+A  
Subjt:  KVGDARKLFG-VMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASI

Query:  CTIVTDMFCKDEKYRECLNLLPRFL
           + D   K     E + L  + +
Subjt:  CTIVTDMFCKDEKYRECLNLLPRFL

Q9SI78 Pentatricopeptide repeat-containing protein At1g627202.3e-0727.34Show/hide
Query:  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKE
        GY P  +        F   ++V DA  L   M+      D  IY          G V  A ELF+++ ++G++ D VTY   +   C       S +  +
Subjt:  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKE

Query:  VVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNL
          + +  MV RD+ P+    T V D+F K+ K+ E + L
Subjt:  VVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNL

Q9ZUE9 Pentatricopeptide repeat-containing protein At2g060003.0e-0731.21Show/hide
Query:  GKLMEIQQQQNFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVK
        G  M +    N L K D+V DA KLF     ++   D+  +          GK E A EL   +S  G +PD+VTY   I  FCK  +++ ++++ + VK
Subjt:  GKLMEIQQQQNFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVK

Query:  RLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFL
                  SPD    T +   +CK  K RE  +LL   L
Subjt:  RLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFL

Arabidopsis top hitse value%identityAlignment
AT1G19290.1 Pentatricopeptide repeat (PPR) superfamily protein9.5e-0928Show/hide
Query:  KVGDARKLFG-VMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASI
        K+ DARKLF  ++ + R   D + Y          G +  A+ L ++++ +G+ P++VTY   I   CK+G VD + +L      LHK+ Q+ ++P+A  
Subjt:  KVGDARKLFG-VMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASI

Query:  CTIVTDMFCKDEKYRECLNLLPRFL
           + D   K     E + L  + +
Subjt:  CTIVTDMFCKDEKYRECLNLLPRFL

AT1G62720.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.6e-0827.34Show/hide
Query:  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKE
        GY P  +        F   ++V DA  L   M+      D  IY          G V  A ELF+++ ++G++ D VTY   +   C       S +  +
Subjt:  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKE

Query:  VVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNL
          + +  MV RD+ P+    T V D+F K+ K+ E + L
Subjt:  VVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNL

AT2G06000.1 Pentatricopeptide repeat (PPR) superfamily protein2.1e-0831.21Show/hide
Query:  GKLMEIQQQQNFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVK
        G  M +    N L K D+V DA KLF     ++   D+  +          GK E A EL   +S  G +PD+VTY   I  FCK  +++ ++++ + VK
Subjt:  GKLMEIQQQQNFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVK

Query:  RLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFL
                  SPD    T +   +CK  K RE  +LL   L
Subjt:  RLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFL

AT5G40400.1 Pentatricopeptide repeat (PPR) superfamily protein3.3e-0924.16Show/hide
Query:  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKE
        G+ P  +       ++  + ++ +A  L+ +M   R+  D   Y          G+V  A + F ++   G++PD ++Y   I+ +CK G +  S KL  
Subjt:  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKE

Query:  VVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERR
            LH+M+   V PD   C ++ + F ++ +    +N    F+V+ RR
Subjt:  VVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERR

AT5G61990.1 Pentatricopeptide repeat (PPR) superfamily protein7.2e-0929.92Show/hide
Query:  NFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDV
        N L+K DKV DA ++F  M+   I+ D   Y          G ++ A  +F+++ +EGL P+V+ Y + +  FC+ G+++ + +L      L +M  + +
Subjt:  NFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDV

Query:  SPDA-SICTIVTDMFCKDEKYRECLNL
         P+A + CTI+ D +CK     E   L
Subjt:  SPDA-SICTIVTDMFCKDEKYRECLNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATACATTTAGAATCGATTTTGAAGGAAAACCGACTCGATCCAACCCAATTATAGGGTACAATCCGGGAAAATTGATGGAAATACAACAGCAACAGAATTTTTTGTA
TAAAGACAAGGTTGGTGATGCAAGAAAGCTATTTGGTGTCATGAAAGCTTATCGTATTTCTGCAGATTCTCATATATATGGAAAAGTTGAAACTGCTTGGGAGCTTTTTG
AAAAATTATCCCAAGAAGGGCTTCAACCAGATGTTGTGACTTATAAAATTAAAATCCATGAGTTTTGTAAGGTGGGACAAGTAGATATGAGTAATAAATTAAAGGAGGTG
GTTAAACGACTCCATAAGATGGTTCAAAGGGATGTGTCACCCGATGCTAGCATTTGCACCATAGTCACTGACATGTTTTGCAAAGATGAAAAATATCGAGAATGTCTAAA
CTTGCTTCCAAGATTTTTAGTCCAAGAGCGTCGAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATACATTTAGAATCGATTTTGAAGGAAAACCGACTCGATCCAACCCAATTATAGGGTACAATCCGGGAAAATTGATGGAAATACAACAGCAACAGAATTTTTTGTA
TAAAGACAAGGTTGGTGATGCAAGAAAGCTATTTGGTGTCATGAAAGCTTATCGTATTTCTGCAGATTCTCATATATATGGAAAAGTTGAAACTGCTTGGGAGCTTTTTG
AAAAATTATCCCAAGAAGGGCTTCAACCAGATGTTGTGACTTATAAAATTAAAATCCATGAGTTTTGTAAGGTGGGACAAGTAGATATGAGTAATAAATTAAAGGAGGTG
GTTAAACGACTCCATAAGATGGTTCAAAGGGATGTGTCACCCGATGCTAGCATTTGCACCATAGTCACTGACATGTTTTGCAAAGATGAAAAATATCGAGAATGTCTAAA
CTTGCTTCCAAGATTTTTAGTCCAAGAGCGTCGAGGTTGA
Protein sequenceShow/hide protein sequence
MHTFRIDFEGKPTRSNPIIGYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIYGKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEV
VKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERRG