CuGenDBv2

Gene ID	CSPI07G16960
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA ligase 1
Genome location	Chr7:15501715..15504944
RNA-Seq Expression	CSPI07G16960
Synteny	CSPI07G16960
Gene Ontology terms	NA
InterPro domains	IPR013730 - Fyv7/TAP26

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593160.1 hypothetical protein SDJN03_12636, partial [Cucurbita argyrosperma subsp. sororia]

7.0e-77

86.39

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Query:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
        MK+  GK E   RSKSKFM  NKH N+KRLGGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQN  NERPSSS+V LVEGENE  
Subjt:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK

Query:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        FENQTN R G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

XP_004136058.2 uncharacterized protein LOC101216293 [Cucumis sativus]

1.5e-95

100

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Query:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
        MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
Subjt:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK

Query:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
Subjt:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

XP_008451439.1 PREDICTED: uncharacterized protein LOC103492733 [Cucumis melo]

1.6e-89

95.81

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Query:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
        MK+ NGKHEH NRSKSKFMN NKHNNIKRLGGK LSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQ NERPSSSTV LVEGENETK
Subjt:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK

Query:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        FENQTN RCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
Subjt:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

XP_022960530.1 uncharacterized protein LOC111461241 [Cucurbita moschata]

5.4e-77

86.39

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Query:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
        MK+  GK E   RSKSKFM  NKH N+KRLGGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQN  NERPSSS+V LVEGENE K
Subjt:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK

Query:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        FEN+TN R G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

XP_038876713.1 uncharacterized protein LOC120069103 [Benincasa hispida]

7.0e-77

86.98

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Query:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
        MK+  GK E  NRS SKFM + KH N+KRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVK+QNQ NERPSSSTV LVE ENETK
Subjt:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK

Query:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETI-GASTNH
        FEN TN R GKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKARRN+TREKMFKRTQKGQPVMKYRIEHLLETI GAS  H
Subjt:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETI-GASTNH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7L3 Uncharacterized protein

7.3e-96

100

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Query:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
        MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
Subjt:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK

Query:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
Subjt:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

A0A1S3BRH3 uncharacterized protein LOC103492733

7.8e-90

95.81

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Query:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
        MK+ NGKHEH NRSKSKFMN NKHNNIKRLGGK LSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQ NERPSSSTV LVEGENETK
Subjt:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK

Query:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        FENQTN RCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
Subjt:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

A0A6J1GP14 uncharacterized protein LOC111455827

7.1e-75

84.74

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Query:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
        MK   G+ E  NR KS FM N KH N+KRLGGKGLSLEAFAN KSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQN  NERPSSSTV LVEGEN TK
Subjt:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK

Query:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTN
         ENQTN R GKERNKG+PSLQ LYERKHEEKEKARMEKEAIIAAKKEE+ERAKARRN+TREKM KRTQKGQPVMKYRIEHLL+TIGAS N
Subjt:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTN

A0A6J1H9B9 uncharacterized protein LOC111461241

2.6e-77

86.39

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Query:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
        MK+  GK E   RSKSKFM  NKH N+KRLGGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQN  NERPSSS+V LVEGENE K
Subjt:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK

Query:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        FEN+TN R G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

A0A6J1KV89 uncharacterized protein LOC111497895

1.7e-76

85.34

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Query:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK
        MK+  GK E   RSKSKF   NKH N+KRLGGKG S +AFANAKSTTDYYNPA IKKQREFYKNAKHVNKYKKLVKHQN  NERPS+STV LVEGENE K
Subjt:  MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETK

Query:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        FEN+TN R G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  FENQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G03180.1 CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).

1.1e-32

45.16

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Query:  HSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETKFE
        + N  HE     KSK     K  N++RLGG GLSL+ FAN KS  + YNP+LIKKQ+EFYKNAK+V+K++K +K QN P++  +  T  + + +++ K +
Subjt:  HSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETKFE

Query:  NQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS
         ++N R G         ++ LY++  EE E+ R E+EA+  AKKE +E A++RR   + KM ++T+ GQPVMKYRIEHLLE+I  S
Subjt:  NQTNDRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS

Sequences

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CDS sequence

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ATGAAGCATTCCAATGGAAAACACGAACATAACAATCGCTCCAAATCGAAATTCATGAACAACAATAAACACAATAATATTAAACGGTTGGGAGGGAAGGGCCTTTCGCT
TGAGGCATTCGCGAATGCTAAATCAACTACCGATTACTATAATCCAGCTTTGATAAAAAAGCAAAGAGAGTTCTATAAGAATGCTAAACATGTCAACAAGTATAAGAAGT
TAGTAAAGCATCAGAATCAACCGAATGAGAGGCCTTCTAGCTCTACTGTTACACTTGTCGAGGGTGAAAATGAAACCAAATTCGAGAATCAGACGAACGATAGATGTGGG
AAAGAAAGGAATAAAGGTGTACCTAGTCTTCAGGCACTGTATGAGAGAAAACATGAAGAGAAAGAGAAAGCAAGAATGGAGAAAGAAGCCATTATCGCTGCAAAAAAGGA
AGAACGAGAAAGGGCTAAGGCTAGACGAAACTCCACAAGAGAAAAAATGTTCAAAAGGACACAAAAAGGTCAGCCAGTTATGAAGTACAGAATTGAGCATCTTTTGGAGA
CTATTGGAGCCTCAACGAACCACTAA

mRNA sequence

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CTTTTTAATGTGTAAATAATAATTTGAAACCAATTCTACTTCTTCGTTTTCTGACCTAATTCTTCTCACTTTCATTCAATCTCTCTGTCCAAACGATGAAGCATTCCAAT
GGAAAACACGAACATAACAATCGCTCCAAATCGAAATTCATGAACAACAATAAACACAATAATATTAAACGGTTGGGAGGGAAGGGCCTTTCGCTTGAGGCATTCGCGAA
TGCTAAATCAACTACCGATTACTATAATCCAGCTTTGATAAAAAAGCAAAGAGAGTTCTATAAGAATGCTAAACATGTCAACAAGTATAAGAAGTTAGTAAAGCATCAGA
ATCAACCGAATGAGAGGCCTTCTAGCTCTACTGTTACACTTGTCGAGGGTGAAAATGAAACCAAATTCGAGAATCAGACGAACGATAGATGTGGGAAAGAAAGGAATAAA
GGTGTACCTAGTCTTCAGGCACTGTATGAGAGAAAACATGAAGAGAAAGAGAAAGCAAGAATGGAGAAAGAAGCCATTATCGCTGCAAAAAAGGAAGAACGAGAAAGGGC
TAAGGCTAGACGAAACTCCACAAGAGAAAAAATGTTCAAAAGGACACAAAAAGGTCAGCCAGTTATGAAGTACAGAATTGAGCATCTTTTGGAGACTATTGGAGCCTCAA
CGAACCACTAAGGCCTTTTGTTGTTTTCACTGAATTTTGTAGAAGAATTTTTTGTCCCTTTAGGAAATGTATATTATATTCTCGTGTACCTTTTAGTTTGCTTCATTATA
CAATCAAATTATTCCAGTGTATTACAATTTTTAGTCTAATCTAAATCATCCATTTGCTTAATATAATCATATTGCCGTCC

Protein sequence

Show/hide protein sequence

MKHSNGKHEHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVNKYKKLVKHQNQPNERPSSSTVTLVEGENETKFENQTNDRCG
KERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

CSPI07G16960 (gene) of Cucumber (PI 183967) v1 genome