CuGenDBv2

Gene ID	CSPI07G17400
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Nucleolar protein 16
Genome location	Chr7:15797561..15799277
RNA-Seq Expression	CSPI07G17400
Synteny	CSPI07G17400
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136032.1 uncharacterized protein LOC101209910 [Cucumis sativus]

1.3e-102

100

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR

XP_008451586.1 PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo]

5.9e-100

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPD+VL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

5.9e-92

90.16

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQV    PPSDDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR
        D+VLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTR
Subjt:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

2.3e-91

89.64

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQV    PPSDDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR
        D+VLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY+ CLD NPLILTR
Subjt:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

3.1e-93

90.26

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWD+K  VI NYKSFGVISNPNLLSVRSRTDHIVESDSLQV    PPSD+P
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKR
        D+VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLIL RK+
Subjt:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAV9 Nucleolar protein 16

6.2e-103

100

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR

A0A1S3BSM4 Nucleolar protein 16

2.9e-100

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPD+VL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK

A0A5A7VLA5 Nucleolar protein 16

2.9e-100

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPD+VL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK
        DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTRK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRK

A0A6J1GRW5 Nucleolar protein 16

3.2e-91

89.12

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR
        D+VLDSSGSDVEEDDLKTALGKKR+DGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTR
Subjt:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR

A0A6J1JMQ4 Nucleolar protein 16

2.9e-92

90.16

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQV    PPSDDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR
        D+VLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLILTR
Subjt:  DTVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

1.1e-64

61.93

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDT--
        M RSRRKY+ SR KV+V LPK+NPN+FKP+F  PPKLR+L+    ++ P WD++ SVIQNYKSFGVISNPNLL +R+RTDH+++ DSL VPP  +P T  
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDT--

Query:  -------VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILT
                +D SGS++EEDDLKTALGK+RKDGKSAPLQPLTT+QR H+ +L+EK+GDD + M+ D KLNSMQHSVATL KLC RY    D NP++++
Subjt:  -------VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILT

Sequences

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CDS sequence

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ATGGGAAGGTCTCGAAGAAAGTACAAGAAATCTCGCCCAAAAGTTAAGGTTGGTTTGCCCAAAAGGAACCCTAATGTCTTCAAGCCATCTTTTTGCATGCCGCCTAAGCT
TCGCTCCTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGGACGAGAAAGGAAGTGTCATTCAAAATTATAAGTCCTTTGGTGTTATTTCTAATCCTAATTTGCTCA
GTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAAGTCCCGCCATCCGATGACCCTGACACCGTTCTTGATTCTTCCGGTAGCGATGTTGAAGAGGAC
GATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCACCTCTGCAACCGTTGACCACACTTCAGCGTGTTCATGTCGGTAAGCTAATCGAGAAATATGG
AGATGATTACCAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCAACTCTGGAGAAACTATGCAAAAGATATAACAGTTGTTTAGATTCGAATC
CATTGATATTGACTCGTAAACGACGATAG

mRNA sequence

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CTACGAAATCCCAAATGAGTGCTTCATCTTCCTCATACTAAAACCCTAGCCACCAATTCCCTTCTCTCCTTCTGATTCACAGAGATGGGAAGGTCTCGAAGAAAGTACAA
GAAATCTCGCCCAAAAGTTAAGGTTGGTTTGCCCAAAAGGAACCCTAATGTCTTCAAGCCATCTTTTTGCATGCCGCCTAAGCTTCGCTCCTTGCTCGCCGAACAATTTG
AAGAAGATCCAACATGGGACGAGAAAGGAAGTGTCATTCAAAATTATAAGTCCTTTGGTGTTATTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATC
GTTGAGAGCGACTCTCTCCAAGTCCCGCCATCCGATGACCCTGACACCGTTCTTGATTCTTCCGGTAGCGATGTTGAAGAGGACGATTTGAAAACAGCATTGGGAAAGAA
GCGCAAAGATGGGAAATCTGCACCTCTGCAACCGTTGACCACACTTCAGCGTGTTCATGTCGGTAAGCTAATCGAGAAATATGGAGATGATTACCAGAGGATGTTTATGG
ATACAAAGCTGAACTCAATGCAGCATTCTGTTGCAACTCTGGAGAAACTATGCAAAAGATATAACAGTTGTTTAGATTCGAATCCATTGATATTGACTCGTAAACGACGA
TAGCTCCTTGTCTCTCAAATTGTTTAGTTACAAGAGGTGAAAATCAGAGACGGTATGATCATGAAATTTTCTTGAGCAATATTGTTTTGAAACTAAATGTTATGAGCCTT
AATAGATAAATCTTTCTTCCTGCTTCCTGTAGTTTTATTCCTTTCAAGAAACTGCTTATAATTTTGATTCATGGTTAGTTGGTC

Protein sequence

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MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDTVLDSSGSDVEED
DLKTALGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYNSCLDSNPLILTRKRR

CSPI07G17400 (gene) of Cucumber (PI 183967) v1 genome