CuGenDBv2

Gene ID	CSPI07G17620
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic
Genome location	Chr7:15932190..15934284
RNA-Seq Expression	CSPI07G17620
Synteny	CSPI07G17620
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

5.6e-172

93.42

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYFKSKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

TYK18147.1 uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]

1.5e-169

92.48

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYFKSKG VSF+S  R PWR +RNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

XP_004136166.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Cucumis sativus]

3.5e-182

99.69

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLGDLKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

1.3e-171

93.1

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

1.3e-171

93.1

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAY7 Uncharacterized protein

1.7e-182

99.69

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLGDLKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

6.1e-172

93.1

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

6.1e-172

93.1

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

A0A5A7VN29 Uncharacterized protein

2.7e-172

93.42

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYFKSKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

A0A5D3D2J4 Uncharacterized protein

7.4e-170

92.48

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYFKSKG VSF+S  R PWR +RNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

3.2e-53

50.22

Show/hide

Query:  TDWEDQEGDIEE-MDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR-VTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVI
        T  E +   I++ + SPWEGA++Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +GL   T D       TPV +SVDVTR+  +LRLDGIV+TVI
Subjt:  TDWEDQEGDIEE-MDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR-VTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVI

Query:  TLNCYSCCEPAPECIFSNFSIILSEEPI-EEPDVINMGIISGKDMFKTDNGNSD----EDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVIC
        TL C+ C EPAP+ IF+NFS++L+E+P+ EEPD   +G I  +D    D G +      D ++ ID DD+L+FP  +KEIDISK+IRD++HLEIT++ +C
Subjt:  TLNCYSCCEPAPECIFSNFSIILSEEPI-EEPDVINMGIISGKDMFKTDNGNSD----EDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVIC

Query:  DPGCKGICLNCGINLN-TGSCKCSKQAVK
        +P CKG+CL CG NLN T SC C  + V+
Subjt:  DPGCKGICLNCGINLN-TGSCKCSKQAVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

5.1e-83

59.39

Show/hide

Query:  IKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV
        IK+   +   +  + +S  E ++I  DWEDQE +IE+  SPWEG+++Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPV
Subjt:  IKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV

Query:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI
        Q+SVDV RK KKLRLDGIV+TVITL C  C E   E IFSNFS++L+EEP+EEPDVI++G   G D  K +  + D++D+  ID +D+L+FPP  KEIDI
Subjt:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI

Query:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ
        SK+IRD++HLEIT+  ICD  CKG+CL CG NLN   C C ++  K   +GPLG+L+ +MQ
Subjt:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

3.6e-84

59.39

Show/hide

Query:  IKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV
        IK+   +   +  + +S  E ++I  DWEDQE +IE+  SPWEG+++Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPV
Subjt:  IKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV

Query:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI
        Q+SVDV RK KKLRLDGIV+TVITL C  C E   E IFSNFS++L+EEP+EEPDVI++G   G D  K +  + D++D+  ID +D+L+FPP  KEIDI
Subjt:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI

Query:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ
        SK+IRD++HLEIT+  ICD  CKG+CL CG NLN   C C ++  K   +GPLG+L+ +MQ
Subjt:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ

Sequences

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CDS sequence

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ATGCTAGCCACATTTCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAATGTATTCTACTTCAAATCCAAAGGGACTGTTTCTTTTGATTCACATTT
TCGAGTTCCATGGAGACTTGTGAGAAATATTCAGCCAAGCTTGGGTGACCCTTGTATTAAGATGAAATCTACTTCCATAAAGTGTGTGAAACCTACGTATCAATCCCTTT
TTGAGGACAATTCGATTATTACTGACTGGGAAGATCAAGAAGGGGATATTGAGGAGATGGACTCACCTTGGGAAGGAGCAATTATTTACAAGAGGAACTCTTCAGTTTCT
CATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCAACGATGGGTCTACGTGTAACTAAAGATGTGAA
AGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTCACAAGGAAAAATAAAAAGTTGAGGTTGGATGGAATAGTTAAAACTGTCATCACTCTGAATTGTTATA
GCTGTTGTGAGCCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATGGGAATCATTAGCGGAAAG
GATATGTTCAAGACTGACAATGGAAATAGTGATGAAGATGATGAAGAGTTGATAGACTTGGATGATCAACTCTATTTTCCTCCTCTGAACAAAGAGATAGATATATCAAA
GAACATTAGAGACATCTTGCATCTAGAAATTACCATGAATGTGATATGTGATCCGGGATGCAAAGGTATTTGTCTAAATTGTGGTATAAATTTGAATACTGGAAGCTGTA
AATGTAGTAAACAGGCTGTAAAGAAGAATGATTTTGGTCCTCTTGGAGATTTGAAAAGACGAATGCAGAACAATTCTTAA

mRNA sequence

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TAACTCGACTACAAAGTCCTTCCATGAGTTAAGGCACTGGATAAAATTTTTCCGGGGAGCGTCATCGAAATTCTCACCATTTTCAAGAACCTTAGGGACGGTGTTATTTG
TATCTACGGAAATTAATTTCTATCCCCTATTCGTTTAAGATGCTAGCCACATTTCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAATGTATTCTA
CTTCAAATCCAAAGGGACTGTTTCTTTTGATTCACATTTTCGAGTTCCATGGAGACTTGTGAGAAATATTCAGCCAAGCTTGGGTGACCCTTGTATTAAGATGAAATCTA
CTTCCATAAAGTGTGTGAAACCTACGTATCAATCCCTTTTTGAGGACAATTCGATTATTACTGACTGGGAAGATCAAGAAGGGGATATTGAGGAGATGGACTCACCTTGG
GAAGGAGCAATTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAAATCTAG
AGCATCAACGATGGGTCTACGTGTAACTAAAGATGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTCACAAGGAAAAATAAAAAGTTGAGGTTGG
ATGGAATAGTTAAAACTGTCATCACTCTGAATTGTTATAGCTGTTGTGAGCCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAA
GAACCTGATGTCATAAATATGGGAATCATTAGCGGAAAGGATATGTTCAAGACTGACAATGGAAATAGTGATGAAGATGATGAAGAGTTGATAGACTTGGATGATCAACT
CTATTTTCCTCCTCTGAACAAAGAGATAGATATATCAAAGAACATTAGAGACATCTTGCATCTAGAAATTACCATGAATGTGATATGTGATCCGGGATGCAAAGGTATTT
GTCTAAATTGTGGTATAAATTTGAATACTGGAAGCTGTAAATGTAGTAAACAGGCTGTAAAGAAGAATGATTTTGGTCCTCTTGGAGATTTGAAAAGACGAATGCAGAAC
AATTCTTAAAGACTTAGAATGCAA

Protein sequence

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MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTSIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVS
HVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGK
DMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

CSPI07G17620 (gene) of Cucumber (PI 183967) v1 genome