CuGenDBv2

Gene ID	CSPI07G18280
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Photosystem II reaction center protein Z
Genome location	Chr7:16358886..16359756
RNA-Seq Expression	CSPI07G18280
Synteny	CSPI07G18280
Gene Ontology terms	GO:0042549 - photosystem II stabilization (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0009539 - photosystem II reaction center (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR002644 - Photosystem II PsbZ, reaction centre IPR036512 - Photosystem II PsbZ superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

PRQ15711.1 putative photosystem II PsbZ, reaction centre [Rosa chinensis]

1.7e-21

90.48

Show/hide

Query:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        + +DWRIRNMTIAFQLAVFALI TS ILLISVPVVFASP+GWSGNKNVVFSGTSLWIGLVFLV
Subjt:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

PRQ45474.1 putative photosystem II PsbZ, reaction centre [Rosa chinensis]

1.7e-21

90.48

Show/hide

Query:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        + +DWRIRNMTIAFQLAVFALI TS ILLISVPVVFASP+GWSGNKNVVFSGTSLWIGLVFLV
Subjt:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

QHN53931.1 photosystem II protein Z [Prunus davidiana]

1.7e-21

90.48

Show/hide

Query:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        + +DWRIRNMTIAFQLAVFALI TS ILLISVPVVFASP+GWSGNKNVVFSGTSLWIGLVFLV
Subjt:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

YP_009700045.1 photosystem II protein Z [Betula pendula var. carelica]

4.6e-22

92.06

Show/hide

Query:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        + +DWRIRNMTIAFQLAVFALI TSSILLISVPVVFASPDGWS NKNVVFSGTSLWIGLVFLV
Subjt:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

YP_009942083.1 photosystem II protein Z [Hovenia dulcis]

2.7e-22

92.06

Show/hide

Query:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        + +DWRIRNMTIAFQLAVFALI TSSILLISVPVVFASPDGW+GNKNVVFSGTSLWIGLVFLV
Subjt:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

TrEMBL top hits

e value

%identity

Alignment

A0A2P6P1A6 Photosystem II reaction center protein Z

8.4e-22

90.48

Show/hide

Query:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        + +DWRIRNMTIAFQLAVFALI TS ILLISVPVVFASP+GWSGNKNVVFSGTSLWIGLVFLV
Subjt:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

A0A2P6RGC6 Photosystem II reaction center protein Z

8.4e-22

90.48

Show/hide

Query:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        + +DWRIRNMTIAFQLAVFALI TS ILLISVPVVFASP+GWSGNKNVVFSGTSLWIGLVFLV
Subjt:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

A0A2Z5DVW3 Photosystem II reaction center protein Z

2.2e-22

92.06

Show/hide

Query:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        + +DWRIRNMTIAFQLAVFALI TSSILLISVPVVFASPDGWS NKNVVFSGTSLWIGLVFLV
Subjt:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

A0A6B9TW67 Photosystem II reaction center protein Z

8.4e-22

90.48

Show/hide

Query:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        + +DWRIRNMTIAFQLAVFALI TS ILLISVPVVFASP+GWSGNKNVVFSGTSLWIGLVFLV
Subjt:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

A0A7L7T933 Photosystem II reaction center protein Z

1.3e-22

92.06

Show/hide

Query:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        + +DWRIRNMTIAFQLAVFALI TSSILLISVPVVFASPDGW+GNKNVVFSGTSLWIGLVFLV
Subjt:  MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

SwissProt top hits

e value

%identity

Alignment

P56790 Photosystem II reaction center protein Z

1.5e-20

96.3

Show/hide

Query:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        MTIAFQLAVFALI+TSSILLISVPVVFASPDGWS NKNVVFSGTSLWIGLVFLV
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

Q09MI1 Photosystem II reaction center protein Z

3.4e-20

96.3

Show/hide

Query:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        MTIAFQLAVFALI TSSILLISVPVVFASPDGWS NKNVVFSGTSLWIGLVFLV
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

Q32902 Photosystem II reaction center protein Z

1.2e-20

98.15

Show/hide

Query:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        MTIAFQLAVFALIVTSSILLISVPVVFASPDGWS NKNVVFSGTSLWIGLVFLV
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

Q4VZN6 Photosystem II reaction center protein Z

2.4e-21

100

Show/hide

Query:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

Q5QA82 Photosystem II reaction center protein Z

4.5e-20

94.44

Show/hide

Query:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        MTIAFQLA+FALI TSSILLISVPVVFASPDGWS NKNVVFSGTSLWIGLVFLV
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00300.1 YCF9

1.1e-21

96.3

Show/hide

Query:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV
        MTIAFQLAVFALI+TSSILLISVPVVFASPDGWS NKNVVFSGTSLWIGLVFLV
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACGTTAGATTGGAGGATTAGAAACATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTGTTACTTCATCAATCTTACTGATTAGTGTGCCCGTTGTATTTGC
TTCTCCTGATGGTTGGTCGGGTAACAAAAATGTTGTATTTTCCGGTACATCGTTATGGATTGGATTAGTCTTTCTGGTGGATGCCACTAGATTTGGCGTTGGGACAAAAT
ATGGGGCGATAACATTTTTTAGGACTTATCATACGAGAAAAAGAAAGCCAACACATATGCGCAAGAGCAAGAGGATCGAAACCGGTGGCTTATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTLDWRIRNMTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLVDATRFGVGTKYGAITFFRTYHTRKRKPTHMRKSKRIETGGL

CSPI07G18280 (gene) of Cucumber (PI 183967) v1 genome