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CSPI07G19310 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G19310
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSm-like protein LSM2
Genome locationChr7:17026518..17028544
RNA-Seq ExpressionCSPI07G19310
SyntenyCSPI07G19310
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0009628 - response to abiotic stimulus (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0000932 - P-body (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016654 - U6 snRNA-associated Sm-like protein LSm2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EPS69310.1 hypothetical protein M569_05456 [Genlisea aurea]1.9e-4398.9Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV+DQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

KAD4584478.1 hypothetical protein E3N88_22079 [Mikania micrantha]1.9e-4398.9Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

XP_004135926.1 sm-like protein LSM2 [Cucumis sativus]1.5e-43100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

XP_008458018.1 PREDICTED: sm-like protein LSM2 isoform X2 [Cucumis melo]1.9e-4398.9Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

XP_008461281.1 PREDICTED: sm-like protein LSM2 [Cucumis melo]3.3e-4398.9Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

TrEMBL top hitse value%identityAlignment
A0A0A0K9T1 Sm-like protein LSM27.2e-44100Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

A0A1S3C840 Sm-like protein LSM29.3e-4498.9Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

A0A4Y7L7W5 Sm-like protein LSM21.6e-4398.9Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

A0A5N6NC01 Sm domain-containing protein9.3e-4498.9Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

S8CR98 Sm-like protein LSM29.3e-4498.9Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV+DQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

SwissProt top hitse value%identityAlignment
O35900 U6 snRNA-associated Sm-like protein LSm24.2e-3375.56Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREA
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D EKYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREA

P38203 U6 snRNA-associated Sm-like protein LSm21.0e-2666.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRRE
        MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D++KYPH+ SVRN FIRGS VRYV L  + VD  LL DATRRE
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRRE

Q1H595 Sm-like protein LSM29.0e-4494.51Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNCFIRGSVVRYVQLP DGVDV+LLHDA RREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm22.5e-3067.39Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREARE
        MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V +++KYP+M+SV+NCFIRGSVVRYV LP + VDVE L D +R EARE
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREARE

Q9Y333 U6 snRNA-associated Sm-like protein LSm24.2e-3375.56Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREA
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D EKYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREA

Arabidopsis top hitse value%identityAlignment
AT1G03330.1 Small nuclear ribonucleoprotein family protein6.4e-4594.51Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNCFIRGSVVRYVQLP DGVDV+LLHDA RREAR
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAR

AT3G07590.1 Small nuclear ribonucleoprotein family protein1.9e-0428.42Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVE--LLHDATRREAREP
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E  L+ D  R + ++P
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVE--LLHDATRREAREP

AT3G07590.2 Small nuclear ribonucleoprotein family protein1.9e-0428.42Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVE--LLHDATRREAREP
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E  L+ D  R + ++P
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVE--LLHDATRREAREP

AT4G02840.1 Small nuclear ribonucleoprotein family protein1.9e-0428.42Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVE--LLHDATRREAREP
        M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E  L+ D  R + ++P
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVE--LLHDATRREAREP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTTGAGTTGAAGAACGACCTAGCAATTAGAGGAACTCTGCATTCTGTAGATCAGTATCTCAA
CATCAAACTGGAAAACACCAGGGTTGTTGATCAGGAAAAATACCCTCATATGCTTTCTGTGAGAAACTGTTTCATCAGGGGATCAGTGGTGAGATATGTTCAACTTCCAC
CAGATGGTGTTGATGTCGAGTTGTTGCATGATGCCACCAGACGCGAGGCTCGAGAGCCTAATGGCTTTGTCACTAAAATCTTGATGGATAAGTATTTCGTGGATGGGGCT
TCCTTATGGCCCCATAGGCGAGCACCATTTTCATCTAAAGGAGCATTTTGTGGGGTAGAGATCTCTTTGTCAGAGACTGGAAAGACAGGTGGGTGGCAAATTTTAACCTT
ATCACCTCTCGATCAATATAACCTTCCCAAGGGCTGGTCTCCTTTTCTAGCCATGATTATGATGTTTCCATGTGGAGGCCATTTGGGGGTCAACAAGGTTGCCCTTAGAG
CAAAGACTTTGGAGAAAGAGTTTATAGAGCACTTTAGGCCCCCCTCGGTTGTTAATGGGCTTGAGACTTGCAAGAGTCGGGAAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTTGAGTTGAAGAACGACCTAGCAATTAGAGGAACTCTGCATTCTGTAGATCAGTATCTCAA
CATCAAACTGGAAAACACCAGGGTTGTTGATCAGGAAAAATACCCTCATATGCTTTCTGTGAGAAACTGTTTCATCAGGGGATCAGTGGTGAGATATGTTCAACTTCCAC
CAGATGGTGTTGATGTCGAGTTGTTGCATGATGCCACCAGACGCGAGGCTCGAGAGCCTAATGGCTTTGTCACTAAAATCTTGATGGATAAGTATTTCGTGGATGGGGCT
TCCTTATGGCCCCATAGGCGAGCACCATTTTCATCTAAAGGAGCATTTTGTGGGGTAGAGATCTCTTTGTCAGAGACTGGAAAGACAGGTGGGTGGCAAATTTTAACCTT
ATCACCTCTCGATCAATATAACCTTCCCAAGGGCTGGTCTCCTTTTCTAGCCATGATTATGATGTTTCCATGTGGAGGCCATTTGGGGGTCAACAAGGTTGCCCTTAGAG
CAAAGACTTTGGAGAAAGAGTTTATAGAGCACTTTAGGCCCCCCTCGGTTGTTAATGGGCTTGAGACTTGCAAGAGTCGGGAAAAGTGA
Protein sequenceShow/hide protein sequence
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREAREPNGFVTKILMDKYFVDGA
SLWPHRRAPFSSKGAFCGVEISLSETGKTGGWQILTLSPLDQYNLPKGWSPFLAMIMMFPCGGHLGVNKVALRAKTLEKEFIEHFRPPSVVNGLETCKSREK