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CSPI07G19650 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G19650
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCCR4-NOT transcription complex subunit like
Genome locationChr7:17235837..17238004
RNA-Seq ExpressionCSPI07G19650
SyntenyCSPI07G19650
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575660.1 hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia]1.0e-3676.56Show/hide
Query:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF
        MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLELRQR  SI AS S+D NSIKEEN SSKASS DAQGPPFLTILAG 
Subjt:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF

Query:  FVLSLILWIFSSAVTSLLGLVVKLISAK
        FV SL+LW+ SSA TSL+GLVVKLIS K
Subjt:  FVLSLILWIFSSAVTSLLGLVVKLISAK

XP_011659472.1 uncharacterized protein LOC101220885 [Cucumis sativus]4.1e-57100Show/hide
Query:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRSIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFV
        MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRSIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRSIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFV

Query:  LSLILWIFSSAVTSLLGLVVKLISAK
        LSLILWIFSSAVTSLLGLVVKLISAK
Subjt:  LSLILWIFSSAVTSLLGLVVKLISAK

XP_022953425.1 uncharacterized protein LOC111455984 [Cucurbita moschata]2.7e-3776.56Show/hide
Query:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF
        MAS+F+APPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLELRQR  SI AS S+DGNSIKEEN SSKASS DAQGPPFLTILAG 
Subjt:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF

Query:  FVLSLILWIFSSAVTSLLGLVVKLISAK
        FV SL+LW+ SSA TSL+GLVVKLIS K
Subjt:  FVLSLILWIFSSAVTSLLGLVVKLISAK

XP_022991945.1 uncharacterized protein LOC111488436 [Cucurbita maxima]4.4e-3575.4Show/hide
Query:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF
        MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLEL  R  SI AS S+DGNSI+EEN SSKASS DAQGPPFLTILAG 
Subjt:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF

Query:  FVLSLILWIFSSAVTSLLGLVVKLIS
        FV SL+LW+ SSA TSL+GLVVKLIS
Subjt:  FVLSLILWIFSSAVTSLLGLVVKLIS

XP_038899532.1 uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida]9.4e-3878.12Show/hide
Query:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF
        MAS+FAAP  +LNLTSR S IHRA LPS I +IQFHSNASPFPSFRYR N  GLELRQR  SI AS S+DGNSIKEEN SSKAS+ DAQGPPFLTILAG 
Subjt:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF

Query:  FVLSLILWIFSSAVTSLLGLVVKLISAK
        FV SL+LWIFSS VTS L LVVKLIS K
Subjt:  FVLSLILWIFSSAVTSLLGLVVKLISAK

TrEMBL top hitse value%identityAlignment
A0A0A0K9W1 Uncharacterized protein2.0e-57100Show/hide
Query:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRSIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFV
        MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRSIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRSIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFV

Query:  LSLILWIFSSAVTSLLGLVVKLISAK
        LSLILWIFSSAVTSLLGLVVKLISAK
Subjt:  LSLILWIFSSAVTSLLGLVVKLISAK

A0A6J1GPL5 uncharacterized protein LOC1114559841.3e-3776.56Show/hide
Query:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF
        MAS+F+APPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLELRQR  SI AS S+DGNSIKEEN SSKASS DAQGPPFLTILAG 
Subjt:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF

Query:  FVLSLILWIFSSAVTSLLGLVVKLISAK
        FV SL+LW+ SSA TSL+GLVVKLIS K
Subjt:  FVLSLILWIFSSAVTSLLGLVVKLISAK

A0A6J1H506 uncharacterized protein LOC1114606321.6e-3067.44Show/hide
Query:  MASVFAAPPSQLNLTSRRSSI-HRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAG
        MASVFAAPPSQL L+S R S+ H+AFLPS I  ++FH N  P PSFRY KN  GL+LRQR  SI AS S+DGNS KE+N  SK +  DAQGPPFLTILAG
Subjt:  MASVFAAPPSQLNLTSRRSSI-HRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAG

Query:  FFVLSLILWIFSSAVTSLLGLVVKLISAK
        FFV SL+LWI SS+VT+L+ L VKLIS K
Subjt:  FFVLSLILWIFSSAVTSLLGLVVKLISAK

A0A6J1JUC2 uncharacterized protein LOC1114884362.1e-3575.4Show/hide
Query:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF
        MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLEL  R  SI AS S+DGNSI+EEN SSKASS DAQGPPFLTILAG 
Subjt:  MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGF

Query:  FVLSLILWIFSSAVTSLLGLVVKLIS
        FV SL+LW+ SSA TSL+GLVVKLIS
Subjt:  FVLSLILWIFSSAVTSLLGLVVKLIS

A0A6J1KVQ7 uncharacterized protein LOC1114980251.9e-3168.99Show/hide
Query:  MASVFAAPPSQLNLTSRRSSI-HRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAG
        MASVFAAPPSQL L+S R S+ H+AFLPS I  ++FH N  P PSFRY KN  GL+LRQR  SI AS S+DGNS KEEN  SK +  DAQGPPFLTILAG
Subjt:  MASVFAAPPSQLNLTSRRSSI-HRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR--SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAG

Query:  FFVLSLILWIFSSAVTSLLGLVVKLISAK
        FFV SL+LWI SS+VT+L+ LVVKLIS K
Subjt:  FFVLSLILWIFSSAVTSLLGLVVKLISAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTC
GAACGCCTCTCCATTTCCTTCTTTCAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCTGCCTCAAAATCCACAGATGGGAATTCCATCAAGG
AGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCT
GCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAA
mRNA sequenceShow/hide mRNA sequence
AAATATTGGTATGATAAGAAAATGATACGTAGATTACGAACGGAAGAAGCACCAACCACTCGCTCTTTGTGTCCGGAGGCTCCAAAGTCTTTGTATTACGACTAAGTCAC
TGACGCTGAAGAATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCAT
TCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCTGCCTCAAAATCCACAGATGGGA
ATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGG
ATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAATGTCGCATAATTGGAATAGTTTCATGTTTCTAAGCATAAATCTGTAT
GGTTATATTTGTAGCAAAACTTACTTTTTAGCCAGTTTTAGCTTTATTTGTAGTGAATAGATTTTGTTTTCATCTTATTTATGCCCTACCTTCAGCTGTCTTCAGGCAAT
TGAGTTGGTAAATAAATAATTGTGTAGATTAACCCATC
Protein sequenceShow/hide protein sequence
MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRSIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSS
AVTSLLGLVVKLISAK