; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G20810 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G20810
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRan BP2/NZF zinc finger-like superfamily protein
Genome locationChr7:17905948..17906527
RNA-Seq ExpressionCSPI07G20810
SyntenyCSPI07G20810
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058772.1 transcription initiation factor TFIID subunit 15b-like [Cucumis melo var. makuwa]4.6e-6887.07Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR-SSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT
        MNRPGDWNCRSCQHLNFQRR+CCQRCGEFKLGGGPELGVFS R+GR SSYGGG++YSPGSDVRPGDWYCGV NCGTHNFANRSTCFKCGAFKDESAASAT
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR-SSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT

Query:  --AAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSRL
            GG GFDFD TCRAFRSFG    NA+SRGA SPWMSGDWICSRL
Subjt:  --AAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSRL

KAE8646450.1 hypothetical protein Csa_016580 [Cucumis sativus]7.6e-7997.92Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATA
        MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATA
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATA

Query:  AGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSRL
        AGG GFDFDATCRAFRSFGFGSSNATSRGASSPW+SGDWICS L
Subjt:  AGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSRL

XP_023514793.1 uncharacterized RNA-binding protein C17H9.04c-like isoform X2 [Cucurbita pepo subsp. pepo]7.7e-4771.05Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGE---------FKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFK
        MNRPGDWNCRSCQHLNFQRR+CCQRCGE         F  GGG   G   S S  SSYGG    SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFK
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGE---------FKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFK

Query:  DESAASATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR
        DESA  ATAAGG GFDFD   R  R+FGFGS+   SRG SS W SGDWICSR
Subjt:  DESAASATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR

XP_031745273.1 zinc finger Ran-binding domain-containing protein 2-like [Cucumis sativus]5.8e-7998.6Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATA
        MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATA
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATA

Query:  AGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR
        AGG GFDFDATCRAFRSFGFGSSNATSRGASSPW+SGDWICSR
Subjt:  AGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR

XP_038899251.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida]2.4e-5682.19Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR---SSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAAS
        MNRPGDWNCRSCQHLNFQRR+CCQRCGE KLG   ELGVF  R GR   SSY GGV+YSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAA 
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR---SSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAAS

Query:  ATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR
          AA G GFDFD TCR  RSFGFGSSN   RG SS WMSGDWICSR
Subjt:  ATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR

TrEMBL top hitse value%identityAlignment
A0A0A0K718 Uncharacterized protein2.8e-7998.6Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATA
        MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATA
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATA

Query:  AGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR
        AGG GFDFDATCRAFRSFGFGSSNATSRGASSPW+SGDWICSR
Subjt:  AGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR

A0A5D3CJI6 Transcription initiation factor TFIID subunit 15b-like2.2e-6887.07Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR-SSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT
        MNRPGDWNCRSCQHLNFQRR+CCQRCGEFKLGGGPELGVFS R+GR SSYGGG++YSPGSDVRPGDWYCGV NCGTHNFANRSTCFKCGAFKDESAASAT
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR-SSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT

Query:  --AAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSRL
            GG GFDFD TCRAFRSFG    NA+SRGA SPWMSGDWICSRL
Subjt:  --AAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSRL

A0A6J1DB61 transcription initiation factor TFIID subunit 15-like2.0e-4569.18Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLG---GGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAAS
        MNRPGDW+CRSCQHLNFQRR+CCQRCG+ K G   GG    + + RS   S  GGV+ SPGSDVRPGDWYCGVGNCGTHNFA+RS+CFKCGAFKDESAA+
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLG---GGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAAS

Query:  ATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR
           AGG GFDFD + RA R FGFG +NA+  G+S  W SGDWIC+R
Subjt:  ATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR

A0A6J1HKM2 uncharacterized RNA-binding protein C17H9.04c-like1.4e-4671.05Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGE---------FKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFK
        MNRPGDWNCRSCQHLNFQRR+CCQRCGE         F  GGG   G   S S  SSYGG    SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFK
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGE---------FKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFK

Query:  DESAASATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR
        DESA  ATAA G GFDFD   R  RSFGFGS+   SRG SS W SGDWICSR
Subjt:  DESAASATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR

A0A6J1KI84 uncharacterized RNA-binding protein C17H9.04c-like1.7e-4467.95Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVF-------------SSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKC
        MNRPGDWNCRSCQHLNFQRR+CCQRCGE +     +LGVF             SS S  SSYGG    SPGSDVRPGDWYCGV NCGTHNFANRS+CF C
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVF-------------SSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKC

Query:  GAFKDESAASATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR
        GAFKDESA  ATAA G GFD D   R  RSFGFG++   SRG SS W SGDWICSR
Subjt:  GAFKDESAASATAAGGSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSR

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c2.5e-0832.64Show/hide
Query:  RPGDWNCRSCQHLNFQRRDCCQRC---GEFKLGGGPELGVFS------------SRSGRSSYGGGVSYSP--------------------------GSDV
        RPGDWNC  C   NFQRR  C RC   G   +        FS            S    ++YGG V +S                           G +V
Subjt:  RPGDWNCRSCQHLNFQRRDCCQRC---GEFKLGGGPELGVFS------------SRSGRSSYGGGVSYSP--------------------------GSDV

Query:  --RPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGG
          R GDW CG   CG HNFA    C +CGA +  +A  A  A G
Subjt:  --RPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGG

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 26.4e-0432.14Show/hide
Query:  GDWNC--RSCQHLNFQRRDCCQRCGEFKL-------GGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESA
        GDW C  + C ++NF RR  C RCG  K         GG E+G   +   R  +               DW C    CG  N+A RS C  C   K    
Subjt:  GDWNC--RSCQHLNFQRRDCCQRCGEFKL-------GGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESA

Query:  ASATAAGGSGFD
           T  GG GF+
Subjt:  ASATAAGGSGFD

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein6.6e-0428.87Show/hide
Query:  RPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT
        + GDW C++C  LNF +   C RC +      P L                       + PG+W C   +C   NF   S C KC   K + AA+ T
Subjt:  RPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT

AT1G70650.2 Ran BP2/NZF zinc finger-like superfamily protein6.6e-0428.87Show/hide
Query:  RPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT
        + GDW C++C  LNF +   C RC +      P L                       + PG+W C   +C   NF   S C KC   K + AA+ T
Subjt:  RPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein8.0e-1833.8Show/hide
Query:  GDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGS
        GDW C +CQH NF++R+ CQ+CG  K GG        +R               ++V  GDWYCG  NCG+HN+A+R++C++CG  K E       A   
Subjt:  GDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGS

Query:  GFDFDATCRAFRSFGFGSSNATSRGASSP--WMSGDWICSRL
                   +   +G+      GA+ P  W +GDW+C R+
Subjt:  GFDFDATCRAFRSFGFGSSNATSRGASSP--WMSGDWICSRL

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein6.3e-3955.03Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLG----GGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAA
        M+RPGDWNCRSC HLNFQRRD CQRCG+ + G    GG + G F  R+  S++G    ++ GSDVRPGDWYC VGNCGTHNFA+RSTCFKCG FKDE+ A
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLG----GGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAA

Query:  SATAAG-GSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSRL
             G G    FDA            S     G  S W SGDWIC+R+
Subjt:  SATAAG-GSGFDFDATCRAFRSFGFGSSNATSRGASSPWMSGDWICSRL

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein7.0e-3856.85Show/hide
Query:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGG--GPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASA
        MNRPGDWNCR C HLNFQRRD CQRC E + GG     L  F  R   SS+G    ++ G DVRPGDWYC +G+CGTHNFANRS+CFKCGA KDE + S+
Subjt:  MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGG--GPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASA

Query:  TAAGGSGFDFDATCRAFRSFGFGSSNATSRGAS-SPWMSGDWICSR
         AA     D +   R    FGFG S++   G   SPW SGDWIC R
Subjt:  TAAGGSGFDFDATCRAFRSFGFGSSNATSRGAS-SPWMSGDWICSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCACCTGAACTTCCAACGGCGGGACTGCTGTCAACGGTGTGGGGAATTCAAATTAGGAGGGGGACCTGAATT
AGGGGTGTTTTCCAGCAGATCGGGAAGGTCGTCCTACGGCGGAGGAGTTTCTTATTCGCCGGGATCTGACGTCCGCCCCGGTGACTGGTACTGCGGAGTGGGCAACTGTG
GGACACATAACTTTGCCAACCGGTCCACTTGTTTCAAATGCGGTGCGTTTAAGGACGAGTCAGCTGCATCCGCGACTGCGGCGGGAGGAAGTGGGTTTGATTTTGATGCG
ACGTGTCGCGCATTCAGAAGCTTTGGATTTGGAAGTAGTAATGCCACGTCACGTGGTGCCTCCTCTCCTTGGATGTCTGGTGATTGGATTTGTTCCAGGTTGGATTTTCA
AACTCTTTAA
mRNA sequenceShow/hide mRNA sequence
GAATTATGCAAATGACAATTACTTTTATCATTCTAAAAGAAACCTTCGTGCGTTATTCTTTTGTAATTACTCCCTCAAATATAGGACGGTATGTGGTTAATGAAACTTAG
TTTTGCAGGTGGTCGGAGGAATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCACCTGAACTTCCAACGGCGGGACTGCTGTCAACGGTGTGGGGAATTCAAA
TTAGGAGGGGGACCTGAATTAGGGGTGTTTTCCAGCAGATCGGGAAGGTCGTCCTACGGCGGAGGAGTTTCTTATTCGCCGGGATCTGACGTCCGCCCCGGTGACTGGTA
CTGCGGAGTGGGCAACTGTGGGACACATAACTTTGCCAACCGGTCCACTTGTTTCAAATGCGGTGCGTTTAAGGACGAGTCAGCTGCATCCGCGACTGCGGCGGGAGGAA
GTGGGTTTGATTTTGATGCGACGTGTCGCGCATTCAGAAGCTTTGGATTTGGAAGTAGTAATGCCACGTCACGTGGTGCCTCCTCTCCTTGGATGTCTGGTGATTGGATT
TGTTCCAGGTTGGATTTTCAAACTCTTTAA
Protein sequenceShow/hide protein sequence
MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGRSSYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGSGFDFDA
TCRAFRSFGFGSSNATSRGASSPWMSGDWICSRLDFQTL