; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G20930 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G20930
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionHistone H2A
Genome locationChr7:17954995..17959466
RNA-Seq ExpressionCSPI07G20930
SyntenyCSPI07G20930
Gene Ontology termsGO:0009266 - response to temperature stimulus (biological process)
GO:0031507 - heterochromatin assembly (biological process)
GO:0044030 - regulation of DNA methylation (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR002119 - Histone H2A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold
IPR032454 - Histone H2A, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV69172.1 Histone domain-containing protein [Cephalotus follicularis]4.5e-45100Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

THU73658.1 hypothetical protein C4D60_Mb04t25180 [Musa balbisiana]2.6e-4585.09Show/hide
Query:  RCLPRHPSCLSHCCYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
        +C+  H    S   YMFPVGR+HRQLK+R++ANGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Subjt:  RCLPRHPSCLSHCCYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI

Query:  PHIHKSLINKSSKE
        PHIHKSLINKS+KE
Subjt:  PHIHKSLINKSSKE

XP_010033915.1 probable histone H2A variant 3 [Eucalyptus grandis]4.5e-45100Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

XP_022152569.1 probable histone H2A variant 3 [Momordica charantia]4.5e-45100Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

XP_031744223.1 probable histone H2A variant 3 isoform X1 [Cucumis sativus]9.2e-8399.37Show/hide
Query:  MILFPNMPCVTSCRHPLDLFSFSLTICLTSIAFLFFTMCAELDIRCLPRHPSCLSHCCYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVL
        MILFPN+PCVTSCRHPLDLFSFSLTICLTSIAFLFFTMCAELDIRCLPRHPSCLSHCCYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVL
Subjt:  MILFPNMPCVTSCRHPLDLFSFSLTICLTSIAFLFFTMCAELDIRCLPRHPSCLSHCCYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVL

Query:  ELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        ELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Subjt:  ELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

TrEMBL top hitse value%identityAlignment
A0A059AJB9 Histone H2A2.2e-45100Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

A0A0A0K6F6 Histone H2A2.2e-45100Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

A0A218XBS8 Histone H2A2.2e-45100Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

A0A4S8KES9 Histone H2A1.3e-4585.09Show/hide
Query:  RCLPRHPSCLSHCCYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
        +C+  H    S   YMFPVGR+HRQLK+R++ANGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Subjt:  RCLPRHPSCLSHCCYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI

Query:  PHIHKSLINKSSKE
        PHIHKSLINKS+KE
Subjt:  PHIHKSLINKSSKE

A0A5D3CH66 Histone H2A2.2e-45100Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

SwissProt top hitse value%identityAlignment
O23628 Histone H2A variant 11.6e-4592.86Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGR+HRQLK+RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

Q84MP7 Probable histone H2A variant 37.2e-4694.9Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGR+HRQLK R  ANGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

Q8H7Y8 Probable histone H2A variant 11.2e-4593.88Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGR+HRQLKSR +A+GRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

Q8S857 Probable histone H2A variant 22.5e-4694.9Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGR+HRQLK RV+ANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

Q9SII0 Probable histone H2A variant 21.4e-4490.82Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

Arabidopsis top hitse value%identityAlignment
AT1G52740.1 histone H2A protein 92.1e-4592.86Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGRVHR LK+R  A+GRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKS+KE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

AT2G38810.1 histone H2A 89.6e-4690.82Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

AT2G38810.2 histone H2A 89.6e-4690.82Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

AT2G38810.3 histone H2A 89.6e-4690.82Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGR+HRQLK RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE

AT3G54560.1 histone H2A 111.1e-4692.86Show/hide
Query:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
        FPVGR+HRQLK+RV+A+GRVGATAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Subjt:  FPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTATTTCCAAACATGCCTTGTGTCACTTCGTGCAGACATCCTTTGGATCTATTCTCATTTTCATTGACCATTTGTCTTACTTCTATTGCATTCCTTTTTTTCAC
TATGTGTGCTGAATTGGACATCCGTTGCCTGCCACGCCACCCCTCCTGCCTTTCACATTGTTGCTACATGTTTCCAGTGGGAAGGGTCCATCGGCAACTGAAGTCGAGGG
TTGCTGCCAATGGACGAGTTGGAGCTACAGCAGCCGTATACACAGCCGCAATCTTGGAGTATCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAATGCGAGCAAGGATCTG
AAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTTGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATTCCTCACAT
CCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG
mRNA sequenceShow/hide mRNA sequence
GTTCGTTTGTGAATCTTTGGAGGGGTAGCTCTAAGTTATTCTCTTTAATCTTAGAAGTAGATGCATGTATTTGGGTCTGTTCTATTTTTAATGTGTTGCTATGATCCTCC
TTTAAGCAGGTCTGTGATTCTTTTGTGAGTCTCGGTTTGTTAATGTTCTTCGTGGTTGGAGAAATAGATTATTTTGTTGAGGTAATGTATTGGGTAGAAAGAAAGAACCA
TGGTAGACTTAGCTTAGGCTGATATGGTTTTACTTATAATTCCCCAATTAAGGTTGGCACCAGTGTGTGAAGCATGCATCCAAGATCAGTTTTTCGTGCTATAGAAGTTG
TCTGTCAAAAGATGTTAGTGAAGGTGAATTGGGATTTGACCATTTTTATGTCTAGATATTTCCCAATCACAATTCAATGGTTCCCAGTTCTTGAGGCATTTAGATAGATA
ACTTATTCGTTTACATGTTGCGAAGTCTCTTTCCTATTGTTAGAGTGACAGAAACTAGGACATTGATCCAATAGTTGTATTAGAAACTTTAAAACATTAAGTACCTACAT
CATCCTAAGTAATTCGAGTAACTAAGGACAATGCTTAACCACCGTATACCAATAGGTATATTTAACGTTTATCTTGTGCGATAGGTAATACATATTATACTCAAGGTGGG
TTTGACCACTAGATTCTCATGTTGATAAATTTTAAAAACATTTATGGAGTGGCAATAAGTTTTTCTCCCATCTCTTCCTTTTCCACTCTTTCTTTTTGTAACAAAATTCA
AGTCACTCCTCAAGTCCATGGGCACACTCCTAGATATTTGAAACCTGGTTGACTGTAGCTAATAACCTGTCACAAATAAAAGCTCAGCCCATAGCTTAGTTTGTATAACA
TCTGACCCTAGAACTCTTCACAACCGTGATACCTGAATTATTTACTTCTATTGGTGGAAAATGAGTCTCAACAATTCTGTTAAAATTTGGCCCTATGTGGCGATGTTTGG
GTCCTGAATATCACTTGTCAAGACCCTACTATTAACCTACCAATAGATTGTGCCCTTACTTGGTTACTACAGCATCGATGATGTATTGGTTAGCTGTGTGGCCTACTCAC
TTTTTTTTCTCTTCTCGCTCCATTTCTATATCATATTCCTCTCTGAAACTCGCAAGTTATGTATCCCGTTTAAATAAAGGGCCGGTTTCTTTTACCTCTCTTCCTTTATG
ATTTTATTTCCAAACATGCCTTGTGTCACTTCGTGCAGACATCCTTTGGATCTATTCTCATTTTCATTGACCATTTGTCTTACTTCTATTGCATTCCTTTTTTTCACTAT
GTGTGCTGAATTGGACATCCGTTGCCTGCCACGCCACCCCTCCTGCCTTTCACATTGTTGCTACATGTTTCCAGTGGGAAGGGTCCATCGGCAACTGAAGTCGAGGGTTG
CTGCCAATGGACGAGTTGGAGCTACAGCAGCCGTATACACAGCCGCAATCTTGGAGTATCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAATGCGAGCAAGGATCTGAAG
GTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTTGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATTCCTCACATCCA
CAAGTCACTCATTAACAAATCCTCCAAGGAATAGGCTTGATCTGTTTTTTATCTTCATCTTACAGTTTAGTTGAGTGGTTGCTTGTCATATGCTCAGTCATGTCATTGTC
TGGTCTAATTTAGTAGTGTCATATTATCAAATTCTACTTTTGTGATGATTACTTCTATCCATTGAGTAGTAGGGGGAGGAGATAAGAAGATATTTCTCGTTTTGTAAGTT
TTAAGATGGTAAATCATTTTCATCTTTAGTAATTTCTGACTCTGGGATTGCTTTGACACTGTCAAATTTACTTACCTGTCAATGTAATTGATGACTTCGCATTATTATTA
TTATTCTTCCTCTGCCAAATATATACATATACTTAAACATCTCCCAAAATCATTACTGGAAAAGAATTGCAGTAAGATCAGTGTGGATGAATTTCCTTT
Protein sequenceShow/hide protein sequence
MILFPNMPCVTSCRHPLDLFSFSLTICLTSIAFLFFTMCAELDIRCLPRHPSCLSHCCYMFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDL
KVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE