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CSPI07G21020 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G21020
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr7:18006742..18007215
RNA-Seq ExpressionCSPI07G21020
SyntenyCSPI07G21020
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.7e-2443.88Show/hide
Query:  THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---N
        +H P L+ALST +   +++MWN +++DWD  PRR LR  E H  W E+K            D P W LN NG + VASVKK   +L Q +   +D    N
Subjt:  THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---N

Query:  IFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL
         F  LWKT IPKKC FFIW+LL+  +NTA+ L +++  L
Subjt:  IFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.1e-2545.65Show/hide
Query:  HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---NI
        H P LFALST ++  +++MWN +++DWD  PRR LR  E +  W E+K            D PTW LN NG + VASVKK   +L Q D   +D+   N 
Subjt:  HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---NI

Query:  FSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL
        F  LWKT IPKKC FFIW+LL+  +NTA+ L +++  L
Subjt:  FSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-2646.67Show/hide
Query:  HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQ
        H P LFALST Q+  +K+MWN +++DWD KPRR LR+ E H  W E+K            D PTW LN +G + VASVKK     +Q      + N F  
Subjt:  HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQ

Query:  LWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL
        LWK+ IPKKC+FFIW+LL+  +NTAD L +++  L
Subjt:  LWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]5.7e-2443.88Show/hide
Query:  THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---N
        +H P L+ALST +   +++MWN +++DWD  PRR LR  E H  W E+K            D P W LN NG + VASVKK   +L Q +   +D    N
Subjt:  THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---N

Query:  IFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL
         F  LWKT IPKKC FFIW+LL+  +NTA+ L +++  L
Subjt:  IFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL

XP_031744692.1 uncharacterized protein LOC116405125 [Cucumis sativus]1.0e-2545.77Show/hide
Query:  APYTH-KPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV
        +P+T   P LFALST +   +  MWN    DWD  PRR LR+ E    W ++K       DS   D P W LN NG F VAS+K      NQ +  + D 
Subjt:  APYTH-KPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV

Query:  NIFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTLNL
         I++ LWK+ IPK+C+FF+W+LLH CINT D+LQR++ T NL
Subjt:  NIFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTLNL

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein2.7e-2443.88Show/hide
Query:  THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---N
        +H P L+ALST +   +++MWN +++DWD  PRR LR  E H  W E+K            D P W LN NG + VASVKK   +L Q +   +D    N
Subjt:  THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---N

Query:  IFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL
         F  LWKT IPKKC FFIW+LL+  +NTA+ L +++  L
Subjt:  IFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein2.5e-2545.65Show/hide
Query:  HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---NI
        H P LFALST ++  +++MWN +++DWD  PRR LR  E +  W E+K            D PTW LN NG + VASVKK   +L Q D   +D+   N 
Subjt:  HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---NI

Query:  FSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL
        F  LWKT IPKKC FFIW+LL+  +NTA+ L +++  L
Subjt:  FSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein1.0e-2345.59Show/hide
Query:  PWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQLW
        P LFALST + G VK+ WN S  DW     R LR+ E +  W+ IK    TP  +R +  P WKLN N  F  ASVKK+  S       +   N++  LW
Subjt:  PWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQLW

Query:  KTKIPKKCRFFIWSLLHCCINTADILQRKVSTLNLS
        K + PKKC+FFIW+L+H CINTAD LQ+++    LS
Subjt:  KTKIPKKCRFFIWSLLHCCINTADILQRKVSTLNLS

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein1.3e-2646.67Show/hide
Query:  HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQ
        H P LFALST Q+  +K+MWN +++DWD KPRR LR+ E H  W E+K            D PTW LN +G + VASVKK     +Q      + N F  
Subjt:  HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQ

Query:  LWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL
        LWK+ IPKKC+FFIW+LL+  +NTAD L +++  L
Subjt:  LWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein2.7e-2443.88Show/hide
Query:  THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---N
        +H P L+ALST +   +++MWN +++DWD  PRR LR  E H  W E+K            D P W LN NG + VASVKK   +L Q +   +D    N
Subjt:  THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---N

Query:  IFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL
         F  LWKT IPKKC FFIW+LL+  +NTA+ L +++  L
Subjt:  IFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAAATCTCTCCTTTTGGAAAGGAAATTGGTGTGAGATCAGCCCCGTATACACATAAACCATGGTTATTTGCCTTATCTACCATCCAAAATGGCTTCGTAAAAGA
AATGTGGAATTGTAGCATTTTGGATTGGGACTTCAAACCAAGAAGATCCCTTCGAAATTGTGAACATCATGCGCAGTGGAATGAAATCAAGCGACATTTCAAAACCCCAA
ATGACAGTAGAGCTATTGACTATCCCACTTGGAAATTGAACATTAATGGTAAATTTGTCGTTGCTTCTGTTAAGAAAGTCTTTTTTAGCTTGAACCAAAGAGATGATATT
GATATTGATGTTAACATCTTTTCTCAACTTTGGAAAACCAAAATCCCCAAGAAATGTCGTTTTTTCATATGGTCTCTTTTACATTGTTGTATTAACACTGCTGACATTCT
TCAGAGAAAAGTTTCAACTCTCAATCTGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAAATCTCTCCTTTTGGAAAGGAAATTGGTGTGAGATCAGCCCCGTATACACATAAACCATGGTTATTTGCCTTATCTACCATCCAAAATGGCTTCGTAAAAGA
AATGTGGAATTGTAGCATTTTGGATTGGGACTTCAAACCAAGAAGATCCCTTCGAAATTGTGAACATCATGCGCAGTGGAATGAAATCAAGCGACATTTCAAAACCCCAA
ATGACAGTAGAGCTATTGACTATCCCACTTGGAAATTGAACATTAATGGTAAATTTGTCGTTGCTTCTGTTAAGAAAGTCTTTTTTAGCTTGAACCAAAGAGATGATATT
GATATTGATGTTAACATCTTTTCTCAACTTTGGAAAACCAAAATCCCCAAGAAATGTCGTTTTTTCATATGGTCTCTTTTACATTGTTGTATTAACACTGCTGACATTCT
TCAGAGAAAAGTTTCAACTCTCAATCTGAGTTAA
Protein sequenceShow/hide protein sequence
MAKISPFGKEIGVRSAPYTHKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDI
DIDVNIFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTLNLS