CuGenDBv2

Gene ID	CSPI07G22700
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA-directed RNA polymerase I subunit rpa49
Genome location	Chr7:19227033..19230305
RNA-Seq Expression	CSPI07G22700
Synteny	CSPI07G22700
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0059416.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa]

7.5e-228

94.27

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Query:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS
        MA+DTKS+ELEENH     A+SQSPAK+KKKSEKKKKRVLSM+AKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVS
Subjt:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_004141689.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis sativus]

8.6e-240

99.54

Show/hide

Query:  MESMADDTKSVELEENHYASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP
        MESMADDTKSVELEENHYASSQSPAK+KKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP
Subjt:  MESMADDTKSVELEENHYASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP

Query:  TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQKL
        TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELS QDKANRMRELTALYGTKKSKKQAQKL
Subjt:  TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQKL

Query:  HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ
        HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ
Subjt:  HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ

Query:  DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL
        DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL
Subjt:  DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL

Query:  HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
Subjt:  HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_008462335.1 PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo]

2.2e-227

94.04

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Query:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS
        MA+DTKS+E EENH     A+SQSPAK+KKKSEKKKKRVLSM+AKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVS
Subjt:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_022992259.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

2.1e-201

83.14

Show/hide

Query:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSRSVRARVYKHKNRPNRMQL
        MA+DTKS ELE+NHY    A+SQSPAK+KKKSEKKKKRV S++AKIQVLSN PQKTPP+V YFPSGFDPHKDA++   E+  SVRARVY+HKN+PNRMQL
Subjt:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSRSVRARVYKHKNRPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV+E ES SV NEELS Q+KA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL
        A+KLH+LKQEDDP+TK DLDG+MKNVVVNKEALE T A++ARNIP YN SATTP+EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVL+LFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

XP_038896156.1 DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida]

2.4e-218

90.37

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Query:  MADDTKSVELEENHYA----SSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS
        MA+DTKS+ELEENHYA    +S+SPAK+KKKSEKKKKRV S++AKIQVL N PQKTPP+VGYFPSGFDPHKDAD+EQ+ SVRARVYKHKN+PNRMQLVVS
Subjt:  MADDTKSVELEENHYA----SSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS Q+KA+RMRELT LYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI
        LHALKQEDDP+TK DLD RMKNVVVN EALEGTQAE+ARNIP YNASATTPQEAYPLDKIILKGEW+FLEDLYFRLQETAEISA YP FVR+RIYKLQDI
Subjt:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPT+ESRR+S +KINLLISHVLVL+LF DEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSL TLPIPLQFP+LRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCN4 Uncharacterized protein

4.2e-240

99.54

Show/hide

Query:  MESMADDTKSVELEENHYASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP
        MESMADDTKSVELEENHYASSQSPAK+KKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP
Subjt:  MESMADDTKSVELEENHYASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP

Query:  TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQKL
        TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELS QDKANRMRELTALYGTKKSKKQAQKL
Subjt:  TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQKL

Query:  HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ
        HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ
Subjt:  HALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQ

Query:  DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL
        DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL
Subjt:  DEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRL

Query:  HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
Subjt:  HFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A1S3CH93 DNA-directed RNA polymerase I subunit rpa49

1.1e-227

94.04

Show/hide

Query:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS
        MA+DTKS+E EENH     A+SQSPAK+KKKSEKKKKRVLSM+AKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVS
Subjt:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A5D3BXN3 DNA-directed RNA polymerase I subunit rpa49

3.7e-228

94.27

Show/hide

Query:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS
        MA+DTKS+ELEENH     A+SQSPAK+KKKSEKKKKRVLSM+AKIQVLSNQPQK PPVVGYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVS
Subjt:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVS

Query:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQK
        PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KANRMRELTALYGTKKSKKQAQK
Subjt:  PTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQK

Query:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI
        LHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARNIPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Subjt:  LHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI

Query:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR
        QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLR
Subjt:  QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLR

Query:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        LHFDNLGCKFIRKNNLSLATLP+PLQFPELRQKRRR
Subjt:  LHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

4.2e-200

82.46

Show/hide

Query:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSRSVRARVYKHKNRPNRMQL
        MA+DTKS ELE+NHY    ++ QSPAK+KKKSEKKKKRV S++AKIQVLSN PQKTPP+V YFPSGFDPHKD ++   E+  SVRARVY+HKN+PNRMQL
Subjt:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSRSVRARVYKHKNRPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV+E ESPSV NEELS Q+KA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL
        A+KL +LKQEDDP+TK DLDG+MKNVVVNKEALE T A++ARNIP YN SATTP+EAYPLDKIILKGEWS+LEDLY  LQE AEISA YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVL+LFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

1.0e-201

83.14

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Query:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSRSVRARVYKHKNRPNRMQL
        MA+DTKS ELE+NHY    A+SQSPAK+KKKSEKKKKRV S++AKIQVLSN PQKTPP+V YFPSGFDPHKDA++   E+  SVRARVY+HKN+PNRMQL
Subjt:  MADDTKSVELEENHY----ASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADK---EQSRSVRARVYKHKNRPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV+E ES SV NEELS Q+KA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQ

Query:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL
        A+KLH+LKQEDDP+TK DLDG+MKNVVVNKEALE T A++ARNIP YN SATTP+EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Subjt:  AQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKL

Query:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVL+LFADEFSSDP+DIAKDLRTSPY
Subjt:  QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

1.2e-10

25.11

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Query:  KKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYAL
        K K  K +      +  +++L       PP+V    SGF P          + R ++ K  N+ NR   ++  T   V F   N   ++TA  +   Y L
Subjt:  KKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYAL

Query:  GVLDKATQSLKIVPIA-SNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMKNVVVNK
         V DK  +  KIVP    N   R    ++  D    +     +  + EQ +AN    L   +GT+KS+K      A+ +E     K++  G +K+ +V+ 
Subjt:  GVLDKATQSLKIVPIA-SNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMKNVVVNK

Query:  -----EALEGTQAEVA------RNIPAYNASATTPQEAYPLDKIILKGEWS--FLEDLYFRLQE---TAEISATYPSFVRNRIYKLQDIQDEEEKKKLCC
             EAL  TQ ++A      R IP  N  A + ++AY L+ II K E+S  +++ L     E      +   +  F+  R  +L  I++ ++K+    
Subjt:  -----EALEGTQAEVA------RNIPAYNASATTPQEAYPLDKIILKGEWS--FLEDLYFRLQE---TAEISATYPSFVRNRIYKLQDIQDEEEKKKLCC

Query:  IFSYITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSMFPTAE---SRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRLHFDN
        I  YI+ L  +   + S+G+  + +      P +L       F       S ++S+ +++ +I ++LVL L  D +S+D   +A DL          F  
Subjt:  IFSYITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSMFPTAE---SRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRLHFDN

Query:  LGCKFIR---------------KNNLSLATLPIPLQFPELRQKRRR
        +GC+ +                  N   A L IPL+FP+ R+ R R
Subjt:  LGCKFIR---------------KNNLSLATLPIPLQFPELRQKRRR

Q54FE8 DNA-directed RNA polymerase I subunit rpa49

8.3e-12

22.57

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Query:  QHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQKLHALKQE--DDPETKSDLDGR
        ++  YA+G+ DK T+ LKIVP     I  ++  V G  +T + S  ++ EE     + +++++L   +G+K +KK+ QK+     E  D  +T   +D  
Subjt:  QHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQKLHALKQE--DDPETKSDLDGR

Query:  MKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFR--LQETAEISATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYIT
             V  E  +    E   ++P ++A     ++ Y ++ I+    +  L    F   + +T+E  +  P + ++++ + +DI+DEE+    C + +++ 
Subjt:  MKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFR--LQETAEISATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYIT

Query:  H---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIRK
        +   L+K K  H    +      ++ + L   F S     +      DK+  + +++ + +L  ++F  +D   +A+ L  +      HF  +GCK +R 
Subjt:  H---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFS-SDPADIAKDLRTSPYDLRLHFDNLGCKFIRK

Query:  NNLSLAT-LPIPLQFPELR
         +   +  L  PL+ P+ R
Subjt:  NNLSLAT-LPIPLQFPELR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

6.0e-98

46.26

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Query:  EENHYASSQ----SPAKRKKKSEKKKKRVLSMD----------AKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSR---SVRARVYKHK-NRPNRMQ
        E+N Y + +    +P + +KK  K KK     +           K+  ++ +P +  P+V YF +G+DP K   K   R   + +  VYKHK +   R+Q
Subjt:  EENHYASSQ----SPAKRKKKSEKKKKRVLSMD----------AKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSR---SVRARVYKHK-NRPNRMQ

Query:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENE-SPSVANEELSEQDKANRMRELTALYGTKKSK
        +VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++  ++L+I+P+A N I RL+P+V+  +  E E S S   +EL E     R R     Y TKK+ 
Subjt:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENE-SPSVANEELSEQDKANRMRELTALYGTKKSK

Query:  KQAQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRL-QETAEISATYPSFVRNRI
         + +K  AL   DD  T+  LDG++  + VN  ALEGT + VARNIP YN +ATT  EAYPL+KII KG+WSFLED+Y+ L QET   +  YP FVRNR+
Subjt:  KQAQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRL-QETAEISATYPSFVRNRI

Query:  YKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRT
        Y+L+DI+D+ +K+ +C   + +THL+K+KD++SM    SAK HK+P + RQKF+SMF  +ES R+  DKINLLIS+VLVLSL  D F +DP DIAKDLR 
Subjt:  YKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRT

Query:  SPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRR
        S  +LR HF  LGCKF+++N+ ++ATLP PL FPE+ ++RR
Subjt:  SPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRR

Sequences

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CDS sequence

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ATGGAATCAATGGCGGACGACACGAAATCTGTTGAATTAGAAGAAAACCATTACGCAAGCTCACAGTCTCCAGCGAAGAGGAAGAAGAAGAGTGAAAAGAAGAAGAAACG
AGTTCTATCAATGGATGCTAAAATCCAAGTTCTCAGCAACCAGCCTCAGAAAACTCCGCCGGTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCTGACA
AGGAACAGTCCCGTTCTGTAAGGGCTAGGGTTTATAAGCACAAGAACAGACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTTGGTACC
AATTATTTAGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTTGATAAGGCCACCCAAAGCTTAAAGATAGTGCCTATTGCATCGAATATGAT
ATTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTACTGAAAATGAATCCCCGAGTGTGGCAAATGAAGAGCTCTCTGAGCAGGACAAAGCTAATAGAATGAGAGAGC
TCACCGCACTCTATGGAACAAAGAAGTCAAAAAAACAGGCACAGAAGCTGCATGCGTTGAAACAAGAGGATGATCCTGAAACCAAGAGCGATCTAGATGGGAGAATGAAA
AATGTGGTGGTAAACAAAGAGGCCTTGGAAGGTACGCAGGCAGAGGTTGCTCGTAATATACCAGCATATAATGCTTCTGCAACTACTCCACAAGAAGCTTACCCGCTCGA
TAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTATTTCCGTTTGCAAGAAACAGCTGAAATAAGTGCTACTTATCCATCCTTTGTTCGCAACAGAATTT
ATAAATTGCAAGATATTCAGGACGAGGAAGAGAAAAAGAAACTCTGCTGCATATTTTCATATATCACTCATCTGATAAAGTATAAGGATCAGCATTCTATGGGTGATGTT
TCTTCTGCAAAGGGTCATAAAATTCCCAGCATGCTACGCCAAAAGTTCTCATCCATGTTTCCGACCGCCGAGTCGAGAAGATTGTCAGCTGATAAAATTAATCTTCTCAT
TAGCCACGTTTTGGTGCTTTCGCTATTTGCGGATGAATTCAGCAGCGATCCAGCAGACATAGCAAAGGATTTGAGAACTAGTCCTTACGATCTAAGACTCCATTTTGATA
ATTTGGGGTGCAAGTTTATACGCAAGAACAACTTGTCATTGGCTACACTTCCTATTCCCCTTCAATTTCCCGAGTTGAGGCAAAAGCGACGGCGATAG

mRNA sequence

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ATAAAACCCTTCAAAAACCCCTTACACACAAAGGTAGTAAATTATAATTTTTCTCCAAAATGGGCTAAATTCGTAAATAAACGATAAAAGAAAGAGAAGAAGAAGAAGAA
GAAGAAAAGCCCCTAAACCCTTTCTCTCTCTTCTTCTCCTTCTCCTCCTCTCATATATCTTTTTTGCCGCCACGCCTCTCAGGCCGCCACGCCAACCACAAATCGCCTTC
GATCGTGTATTGCTTCAACCGCTGAAGCCGCCCCCAGTACCGACGGAAAATAAGTCTCCGCCGTCGTCCATTGCTGTCGGACTGTAATTCCCGAAGCCATTTCCTTTCTG
TTCAGGTTCTTCGGATTAATATCTTGAAATTTGGAGTTCTTCGATGGAATCAATGGCGGACGACACGAAATCTGTTGAATTAGAAGAAAACCATTACGCAAGCTCACAGT
CTCCAGCGAAGAGGAAGAAGAAGAGTGAAAAGAAGAAGAAACGAGTTCTATCAATGGATGCTAAAATCCAAGTTCTCAGCAACCAGCCTCAGAAAACTCCGCCGGTAGTT
GGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCTGACAAGGAACAGTCCCGTTCTGTAAGGGCTAGGGTTTATAAGCACAAGAACAGACCAAATAGGATGCAGCT
GGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTTGGTACCAATTATTTAGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTTGATAAGG
CCACCCAAAGCTTAAAGATAGTGCCTATTGCATCGAATATGATATTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTACTGAAAATGAATCCCCGAGTGTGGCAAAT
GAAGAGCTCTCTGAGCAGGACAAAGCTAATAGAATGAGAGAGCTCACCGCACTCTATGGAACAAAGAAGTCAAAAAAACAGGCACAGAAGCTGCATGCGTTGAAACAAGA
GGATGATCCTGAAACCAAGAGCGATCTAGATGGGAGAATGAAAAATGTGGTGGTAAACAAAGAGGCCTTGGAAGGTACGCAGGCAGAGGTTGCTCGTAATATACCAGCAT
ATAATGCTTCTGCAACTACTCCACAAGAAGCTTACCCGCTCGATAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTATTTCCGTTTGCAAGAAACAGCT
GAAATAAGTGCTACTTATCCATCCTTTGTTCGCAACAGAATTTATAAATTGCAAGATATTCAGGACGAGGAAGAGAAAAAGAAACTCTGCTGCATATTTTCATATATCAC
TCATCTGATAAAGTATAAGGATCAGCATTCTATGGGTGATGTTTCTTCTGCAAAGGGTCATAAAATTCCCAGCATGCTACGCCAAAAGTTCTCATCCATGTTTCCGACCG
CCGAGTCGAGAAGATTGTCAGCTGATAAAATTAATCTTCTCATTAGCCACGTTTTGGTGCTTTCGCTATTTGCGGATGAATTCAGCAGCGATCCAGCAGACATAGCAAAG
GATTTGAGAACTAGTCCTTACGATCTAAGACTCCATTTTGATAATTTGGGGTGCAAGTTTATACGCAAGAACAACTTGTCATTGGCTACACTTCCTATTCCCCTTCAATT
TCCCGAGTTGAGGCAAAAGCGACGGCGATAGGTGAGATGGCTGGATTGTAGATGTTACACATCTATTGTTATTGAAGAAGCTGAATTCTTTCTAGGCAGCAAAGTTGGAG
CAATTTTGTGGAGTGAAACCGGTAAATGGTCATTTTTTGTAATTCAGGTGTTATTTCTTTCATATTGCAAATGACGATGCCGACTTGTTTCTTCTATGAAGTACCTCTGC
TTAGAAAGGTGTTACGTTATTTGGAAGTTGAAACTTTGGATCATCAAAAACTAATTTGGAAACAAGTCAAATGACTTTTCTTTTTTCTCTTACA

Protein sequence

Show/hide protein sequence

MESMADDTKSVELEENHYASSQSPAKRKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFVGT
NYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSEQDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMK
NVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDV
SSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR

CSPI07G22700 (gene) of Cucumber (PI 183967) v1 genome