CuGenDBv2

Gene ID	CSPIUnG00040
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	coiled-coil domain-containing protein 1 isoform X3
Genome location	Scaffold000091:15326..17450
RNA-Seq Expression	CSPIUnG00040
Synteny	CSPIUnG00040
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0066134.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]

2.1e-78

87.5

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSIL DDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DRIKERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.5e-65

78.65

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Query:  KKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSI
        +K G GN+D  EQ+EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRP          PR S PH QSDSS + PPPIENLVVDGESQSI
Subjt:  KKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSI

Query:  LGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDE------EEEFTSSDEDVDDRIKERRKKK
        LGDDLAARFAALKASLPSS  P  SSIPND DS+DEEDEVEKLIQWAKDAARLDPSPPSEE DE      +EEF SSDED+DDR KERRKKK
Subjt:  LGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDE------EEEFTSSDEDVDDRIKERRKKK

TYK15177.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]

3.2e-79

88.02

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSILGDDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DRIKERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

XP_004150191.1 uncharacterized protein LOC101219995 [Cucumis sativus]

6.9e-90

100

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLA
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLA
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLA

Query:  ARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        ARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
Subjt:  ARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

XP_016903615.1 PREDICTED: uncharacterized protein LOC103502866 [Cucumis melo]

2.1e-78

86.98

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDL+LKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSILGDDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DR+KERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E6L5 uncharacterized protein LOC103502866

1.0e-78

86.98

Show/hide

Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDL+LKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSILGDDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DR+KERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

A0A5A7VFP6 Transcription initiation factor TFIID subunit 11 isoform X3

1.0e-78

87.5

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSIL DDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DRIKERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X3

1.5e-79

88.02

Show/hide

Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE
        MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRSRP          PRSSHPHIQSDSS +PPPPIENLVVDGE
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP----------PRSSHPHIQSDSSFQPPPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG
        SQSILGDDLAARFAALKASLPSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+DRIKERRKKK G
Subjt:  SQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

A0A6J1FGM0 nucleolin

4.8e-65

79.69

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Query:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP---------PRSSHPHIQSDSSFQPPPPIENLVVDGES
        MD RK    GN+D  EQ+EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRP         PR S PH QSDSS + PPPIENLVVDGES
Subjt:  MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP---------PRSSHPHIQSDSSFQPPPPIENLVVDGES

Query:  QSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDE---EEEFTSSDEDVDDRIKERRKKK
        QSILGDDLAARFAALKASLPSS  P  SSIPND DS+DEEDEVEKLIQWAKDAARLDPSPPSEE DE   +EEF SSDED+DDR KERRKKK
Subjt:  QSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDE---EEEFTSSDEDVDDRIKERRKKK

A0A6J1JTW4 glucosidase 2 subunit beta

2.2e-65

78.95

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Query:  KKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP--------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILG
        +K G GN+D  EQ+EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRP        PR+S PH QSDSS + PPPIENLVVDGESQSILG
Subjt:  KKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP--------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILG

Query:  DDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDE------EEEFTSSDEDVDDRIKERRKKK
        DDLAARFAALKASLPSS  P  SSIPND DS+DEEDEVEKLIQWAKDA RLDPSPPSEE DE      +EEF SSDED+DDR KERRKKK
Subjt:  DDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDE------EEEFTSSDEDVDDRIKERRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24370.1 unknown protein

5.9e-23

45.18

Show/hide

Query:  RGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKA
        R    E++++EQLLQAAQD+++LKLS+DSH SR S +YLD DL  RF AL+S+  +      +     QP    +++V +        +DL  RFAALK 
Subjt:  RGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKA

Query:  SLP----SSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD
        SLP    SS+  L   I  D D   E+ EV+KLIQWA DAARLDPSP S+  DE+ +   SD++ D
Subjt:  SLP----SSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD

Sequences

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CDS sequence

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ATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAGGAACAAATCGAGCAACTGTTACAAGCAGCTCAAGACGATCTGATGCTCAAATTGAGCCTCGATTC
TCACATGTCTCGTGTTTCCCCTAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCTCGTCCTCCTCGCTCTTCTCACCCGCATATTCAGTCCGATT
CCTCGTTCCAACCGCCGCCGCCGATTGAAAATCTCGTCGTCGATGGCGAATCTCAGTCGATTCTCGGCGACGATCTTGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTG
CCTTCCTCGGCTGCTCCGCTTTCATCCTCGATACCTAATGATGCTGATAGCGAGGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACT
CGATCCTTCGCCTCCATCTGAGGAAGGCGATGAAGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATCGGATAAAAGAGCGTCGGAAAAAGAAGGGCGGATGA

mRNA sequence

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TAGAAAAAGGTATTATTTAACAAAATTGCTAAAAAAAATCGACGAAAAAGAAAATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAGGAACAAATCGAG
CAACTGTTACAAGCAGCTCAAGACGATCTGATGCTCAAATTGAGCCTCGATTCTCACATGTCTCGTGTTTCCCCTAACTATCTCGATTCCGATCTCGATCGCCGTTTCCA
AGCCCTAAGATCTCGTCCTCCTCGCTCTTCTCACCCGCATATTCAGTCCGATTCCTCGTTCCAACCGCCGCCGCCGATTGAAAATCTCGTCGTCGATGGCGAATCTCAGT
CGATTCTCGGCGACGATCTTGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGGCTGCTCCGCTTTCATCCTCGATACCTAATGATGCTGATAGCGAGGAC
GAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGGCGATGAAGAAGAGGAGTTCACTAGTTCCGA
TGAAGATGTCGACGATCGGATAAAAGAGCGTCGGAAAAAGAAGGGCGGATGAGCGTTGATTGAAACTGCTGTCTGTTTGTGCATTATTGGATTCACTGATTTTGTGGCAT
TTAGAAACTGGAGATTCGCAGATTGGATAGATACAATCCGGATTTTGGTTGAACTAGATCGTGATTCATGTTGAAGCAATGGGCTTCAACTCCTTTTTGGCTCAACTGCT
TCTCTTGAGCAACGATTTGTTTCAGATGGTTGATCTTCTTCAACCACATGGACTTCCTCTACATTAGAGAACATGACTTCAGAGTAAGACACGTGCCTATGGTTTCTTCA
TATTCTCCAGTCTACAGAAGTGATTTAAAACAAATATTTGTATGAAAGTTTGAAAGAAATGCCAGTTTTTCACAAAATATAGACTACAACAGCCTTGAATCAAACCAAAA
GATAAGAAGGTAAGA

Protein sequence

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MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL
PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG

CSPIUnG00040 (gene) of Cucumber (PI 183967) v1 genome