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CSPIUnG00820 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPIUnG00820
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionU2 small nuclear ribonucleoprotein auxiliary factor-like protein
Genome locationScaffold000138:59556..60131
RNA-Seq ExpressionCSPIUnG00820
SyntenyCSPIUnG00820
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460879.1 PREDICTED: uncharacterized protein LOC103499622 isoform X1 [Cucumis melo]3.8e-1278Show/hide
Query:  LLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
        L +  ++Q    KSVHDIGSTKIT HVVPTHRRARTRGALLQDNEDDDGR
Subjt:  LLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
XP_008460880.1 PREDICTED: uncharacterized protein LOC103499622 isoform X2 [Cucumis melo]3.8e-1278Show/hide
Query:  LLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
        L +  ++Q    KSVHDIGSTKIT HVVPTHRRARTRGALLQDNEDDDGR
Subjt:  LLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
XP_011649429.1 uncharacterized protein LOC101217609 isoform X1 [Cucumis sativus]1.5e-1194.87Show/hide
Query:  HKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
        +KSVHDIGSTKITKHVVPTH RARTRGALLQDNEDDDGR
Subjt:  HKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
XP_011649430.1 uncharacterized protein LOC101217609 isoform X3 [Cucumis sativus]1.5e-1194.87Show/hide
Query:  HKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
        +KSVHDIGSTKITKHVVPTH RARTRGALLQDNEDDDGR
Subjt:  HKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
XP_038902925.1 uncharacterized protein LOC120089505 isoform X3 [Benincasa hispida]1.2e-0883.78Show/hide
Query:  SVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
        +VHDIGSTK+TK V+P HRRARTRGALLQDNEDD+GR
Subjt:  SVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
TrEMBL top hitse value%identityAlignment
A0A1S3CDX2 uncharacterized protein LOC103499622 isoform X11.9e-1278Show/hide
Query:  LLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
        L +  ++Q    KSVHDIGSTKIT HVVPTHRRARTRGALLQDNEDDDGR
Subjt:  LLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
A0A1S3CEM0 uncharacterized protein LOC103499622 isoform X21.9e-1278Show/hide
Query:  LLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
        L +  ++Q    KSVHDIGSTKIT HVVPTHRRARTRGALLQDNEDDDGR
Subjt:  LLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
A0A5A7TGG1 Uncharacterized protein1.9e-1278Show/hide
Query:  LLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
        L +  ++Q    KSVHDIGSTKIT HVVPTHRRARTRGALLQDNEDDDGR
Subjt:  LLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
A0A6J1D4D2 uncharacterized protein LOC111017494 isoform X15.3e-0776.32Show/hide
Query:  KSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
        K V+DI STK+T  V+P HRRARTRGALLQDNEDD GR
Subjt:  KSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
A0A6J1D6X2 uncharacterized protein LOC111017494 isoform X23.1e-0766.67Show/hide
Query:  KVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
        ++Q    K V+DI STK+T  V+P HRRARTRGALLQDNEDD GR
Subjt:  KVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGACTATCTTGTTGTTACCAACTAAAGTTCAGGGTCAAAATCACAAATCTGTTCATGATATCGGCTCGACAAAAATCACCAAGCATGTCGTGCCAACACATCGCAG
GGCAAGAACACGAGGTGCCCTTCTGCAAGATAACGAAGATGACGATGGAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGACTATCTTGTTGTTACCAACTAAAGTTCAGGGTCAAAATCACAAATCTGTTCATGATATCGGCTCGACAAAAATCACCAAGCATGTCGTGCCAACACATCGCAG
GGCAAGAACACGAGGTGCCCTTCTGCAAGATAACGAAGATGACGATGGAAGGTAAAAAAAACAAGACAGTTTCAAAATGTTGAGTCCTTGTGTTCAAAACTAGTGTTAGA
CATGGAGTAGGTAAACAAAATAATTGTTGTATATGATTACGTAATTCTCATCTAACTTTGGCTTTCTGCTCAATTTAGATTCGAAAATGTGTAAATTTTCGAATGACGAA
TGGATACAAATTTGAAATATATTGTGCAGCTTAAAACAAGTCACAGTGTGAGACTTTTCATTAATTTCTCA
Protein sequenceShow/hide protein sequence
MRTILLLPTKVQGQNHKSVHDIGSTKITKHVVPTHRRARTRGALLQDNEDDDGR