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CaUC01G000110 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G000110
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description60S acidic ribosomal protein P1
Genome locationCiama_Chr01:76847..77335
RNA-Seq ExpressionCaUC01G000110
SyntenyCaUC01G000110
Gene Ontology termsNA
InterPro domainsIPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VDD28308.1 unnamed protein product [Brassica oleracea]5.0e-1044.76Show/hide
Query:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS----------LSISSSAGNAAPA---------------------PEEVMEESED
        +TSELACTY ALILH D I + AEKI+K V AA + VESYWPSLF+          +++ +S   AAP                       EEV EESED
Subjt:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS----------LSISSSAGNAAPA---------------------PEEVMEESED

Query:  EMVLG
        +MV G
Subjt:  EMVLG

XP_006394706.1 60S acidic ribosomal protein P1 [Eutrema salsugineum]1.3e-1044.86Show/hide
Query:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAPA---------------------PEEVMEES
        +TSELACTY ALILH D I + AEKISK V AA + VESYWPSLF+            +++ +S G AAP                       E+V EES
Subjt:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAPA---------------------PEEVMEES

Query:  EDEMVLG
        ED+MV G
Subjt:  EDEMVLG

XP_013659163.1 60S acidic ribosomal protein P1 isoform X2 [Brassica napus]6.6e-1044.34Show/hide
Query:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAPA--------------------PEEVMEESE
        +TSELACTY ALILH D I + AEKI+K V AA + VESYWPSLF+            +++ +S   AAP                      EEV EESE
Subjt:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAPA--------------------PEEVMEESE

Query:  DEMVLG
        D+MV G
Subjt:  DEMVLG

XP_022138163.1 60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia]1.2e-1151.43Show/hide
Query:  ELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLF-------------------------SLSISSSA-GNAAPAP--------EEVMEESED
        ELACTY ALILH DAISV AEKI+  V AAGLTVESYWPSLF                         S++ SSSA  +AAPAP        EE +EESED
Subjt:  ELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLF-------------------------SLSISSSA-GNAAPAP--------EEVMEESED

Query:  EMVLG
        ++V G
Subjt:  EMVLG

XP_022138164.1 60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia]1.3e-1353.21Show/hide
Query:  MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLF-------------------------SLSISSSA-GNAAPAP--------EEVME
        MSTSELACTY ALILH DAISV AEKI+  V AAGLTVESYWPSLF                         S++ SSSA  +AAPAP        EE +E
Subjt:  MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLF-------------------------SLSISSSA-GNAAPAP--------EEVME

Query:  ESEDEMVLG
        ESED++V G
Subjt:  ESEDEMVLG

TrEMBL top hitse value%identityAlignment
A0A397XR95 Uncharacterized protein3.2e-1044.34Show/hide
Query:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAPA--------------------PEEVMEESE
        +TSELACTY ALILH D I + AEKI+K V AA + VESYWPSLF+            +++ +S   AAP                      EEV EESE
Subjt:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAPA--------------------PEEVMEESE

Query:  DEMVLG
        D+MV G
Subjt:  DEMVLG

A0A3P6DP70 Uncharacterized protein2.4e-1044.76Show/hide
Query:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS----------LSISSSAGNAAPA---------------------PEEVMEESED
        +TSELACTY ALILH D I + AEKI+K V AA + VESYWPSLF+          +++ +S   AAP                       EEV EESED
Subjt:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS----------LSISSSAGNAAPA---------------------PEEVMEESED

Query:  EMVLG
        +MV G
Subjt:  EMVLG

A0A6J1C9A3 60S acidic ribosomal protein P1-like isoform X26.2e-1453.21Show/hide
Query:  MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLF-------------------------SLSISSSA-GNAAPAP--------EEVME
        MSTSELACTY ALILH DAISV AEKI+  V AAGLTVESYWPSLF                         S++ SSSA  +AAPAP        EE +E
Subjt:  MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLF-------------------------SLSISSSA-GNAAPAP--------EEVME

Query:  ESEDEMVLG
        ESED++V G
Subjt:  ESEDEMVLG

A0A6J1CC92 60S acidic ribosomal protein P1-like isoform X15.8e-1251.43Show/hide
Query:  ELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLF-------------------------SLSISSSA-GNAAPAP--------EEVMEESED
        ELACTY ALILH DAISV AEKI+  V AAGLTVESYWPSLF                         S++ SSSA  +AAPAP        EE +EESED
Subjt:  ELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLF-------------------------SLSISSSA-GNAAPAP--------EEVMEESED

Query:  EMVLG
        ++V G
Subjt:  EMVLG

V4KQ04 Uncharacterized protein6.4e-1144.86Show/hide
Query:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAPA---------------------PEEVMEES
        +TSELACTY ALILH D I + AEKISK V AA + VESYWPSLF+            +++ +S G AAP                       E+V EES
Subjt:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAPA---------------------PEEVMEES

Query:  EDEMVLG
        ED+MV G
Subjt:  EDEMVLG

SwissProt top hitse value%identityAlignment
P18660 60S acidic ribosomal protein P16.4e-0834.86Show/hide
Query:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFSLSISS----------------------------SAGNAAPAPE-------EVME
        S SELAC Y+ALILH D ++V  +KI+  + AAG+ VE +WP LF+ ++++                            + G AAPA E       E  E
Subjt:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFSLSISS----------------------------SAGNAAPAPE-------EVME

Query:  ESEDEMVLG
        ES+D+M  G
Subjt:  ESEDEMVLG

P29763 60S acidic ribosomal protein P15.8e-0946.48Show/hide
Query:  MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS-----------LSISSSAGNAAPA
        MSTSELACTY ALILH D + + A+ I+    AAG+ VE YWP+LF+           ++   + G AAPA
Subjt:  MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS-----------LSISSSAGNAAPA

P47955 60S acidic ribosomal protein P13.8e-0835.78Show/hide
Query:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFSLSI----------------------SSSAGNAAP-------------APEEVME
        S SELAC Y+ALILH D ++V  +KI+  + AAG++VE +WP LF+ ++                      ++ AG AAP             A +E  E
Subjt:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFSLSI----------------------SSSAGNAAP-------------APEEVME

Query:  ESEDEMVLG
        ESED+M  G
Subjt:  ESEDEMVLG

P52855 60S acidic ribosomal protein P11.7e-0840.82Show/hide
Query:  MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAG---------------NAAPAPEEVMEESEDE
        M++ ELAC Y ALIL  D I++ AEKI+  V AA + VESYWP+LF+            LS+ S  G                AAPA EE  EE+++E
Subjt:  MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAG---------------NAAPAPEEVMEESEDE

Q56K14 60S acidic ribosomal protein P18.4e-0842.65Show/hide
Query:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFSLSISS--------SAGNAAPAP
        S SELAC Y+ALILH D ++V  +KI+  + AAG+ VE +WP LF+ ++++        + G   PAP
Subjt:  STSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFSLSISS--------SAGNAAPAP

Arabidopsis top hitse value%identityAlignment
AT1G01100.1 60S acidic ribosomal protein family1.9e-0738.89Show/hide
Query:  MST-SELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAP
        MST  ELAC+Y  +IL  + I++ A+KI+  V AAG+++ESYWP LF+            +++ +  G  AP
Subjt:  MST-SELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAP

AT1G01100.3 60S acidic ribosomal protein family2.0e-0939.13Show/hide
Query:  MST-SELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAPAPEEVMEE---SEDEMVLGF
        MST  ELAC+Y  +IL  + I++ A+KI+  V AAG+++ESYWP LF+            +++ +  G AAPA EE  ++    E +  LGF
Subjt:  MST-SELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAPAPEEVMEE---SEDEMVLGF

AT5G24510.1 60S acidic ribosomal protein family6.8e-1345.37Show/hide
Query:  MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS----------LSISSSAG---------NAAPA-------PEE-------VMEE
        MSTSELACTY ALILH D I + AE ISK V  A + VESYWPSLF+          L ++  AG          AAP        PEE       + EE
Subjt:  MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS----------LSISSSAG---------NAAPA-------PEE-------VMEE

Query:  SEDEMVLG
        SED+M++G
Subjt:  SEDEMVLG

AT5G47700.1 60S acidic ribosomal protein family6.6e-0840.28Show/hide
Query:  MST-SELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAP
        MST  ELAC+Y  +IL  + I++ A+KI+  V AAG+T+ESYWP LF+            +++ +  G  AP
Subjt:  MST-SELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAP

AT5G47700.2 60S acidic ribosomal protein family6.6e-0840.28Show/hide
Query:  MST-SELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAP
        MST  ELAC+Y  +IL  + I++ A+KI+  V AAG+T+ESYWP LF+            +++ +  G  AP
Subjt:  MST-SELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFS------------LSISSSAGNAAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCAGTGAACTCGCTTGCACCTACACCGCCTTGATTCTTCATGGCGACGCCATCTCCGTCGCTGCCGAGAAGATTTCCAAGTCGGTGAACGCTGCCGGC
CTTACCGTCGAATCCTACTGGCCTTCTCTCTTTTCTCTCTCCATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGAAGAGGTGATGGAAGAGAGCGAGGAT
GAGATGGTCTTGGGCTTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACCAGTGAACTCGCTTGCACCTACACCGCCTTGATTCTTCATGGCGACGCCATCTCCGTCGCTGCCGAGAAGATTTCCAAGTCGGTGAACGCTGCCGGC
CTTACCGTCGAATCCTACTGGCCTTCTCTCTTTTCTCTCTCCATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGAAGAGGTGATGGAAGAGAGCGAGGAT
GAGATGGTCTTGGGCTTTGTTTGA
Protein sequenceShow/hide protein sequence
MSTSELACTYTALILHGDAISVAAEKISKSVNAAGLTVESYWPSLFSLSISSSAGNAAPAPEEVMEESEDEMVLGFV