CuGenDBv2

Gene ID	CaUC01G003380
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	transcription factor bHLH120-like
Genome location	Ciama_Chr01:3658246..3658563
RNA-Seq Expression	CaUC01G003380
Synteny	CaUC01G003380
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:2000112 - regulation of cellular macromolecule biosynthetic process (biological process) GO:0090575 - RNA polymerase II transcription factor complex (cellular component) GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function) GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR015660 - Achaete-scute transcription factor-related

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042815.1 transcription factor bHLH120-like protein [Cucumis melo var. makuwa]

1.1e-34

71.43

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Query:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE
        M  +G TE LNSS+RDSVVVR+K+ +GIQVVLDTA KHRLP+S  +  L+ EG EIL+CISN+LNER IHTIECQ I+ +DGCYPTIDAS LQHKL NLE
Subjt:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE

Query:  YFPLD
        Y+PLD
Subjt:  YFPLD

KAG6579463.1 Transcription factor basic helix-loop-helix 126, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-33

72.82

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Query:  SVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLEYF
        +VG  E LNSS+RDSVVVRSKN LGIQVVLDTA +HRLP+S+++ VL  EG EILSCI+ K+NER +HTIECQ IV+NDGCYP+ID S+LQHKL NLEY 
Subjt:  SVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLEYF

Query:  PLD
        PLD
Subjt:  PLD

NP_001295816.1 transcription factor bHLH118-like [Cucumis sativus]

5.8e-33

68.57

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Query:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE
        +A  G TE LNSS+R S VVR+K+ +GIQVVLDTA K RLP+S  +  L+ EG EIL+CISN+LNER IHTIECQP++N+DGCYPTID S LQHKL NLE
Subjt:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE

Query:  YFPLD
        Y+PLD
Subjt:  YFPLD

XP_016903725.1 PREDICTED: transcription factor bHLH120-like [Cucumis melo]

1.1e-34

71.43

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Query:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE
        M  +G TE LNSS+RDSVVVR+K+ +GIQVVLDTA KHRLP+S  +  L+ EG EIL+CISN+LNER IHTIECQ I+ +DGCYPTIDAS LQHKL NLE
Subjt:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE

Query:  YFPLD
        Y+PLD
Subjt:  YFPLD

XP_038875626.1 transcription factor bHLH118-like [Benincasa hispida]

8.9e-34

71.15

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Query:  ASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLEY
        A+V   + LNSS+RDSVVVR K+ +GIQVV+DTA KHR P+SN L  L  EG EILSCISN+LNER IHTIECQPI+NNDG YP ID  EL HKL NLEY
Subjt:  ASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLEY

Query:  FPLD
        FPLD
Subjt:  FPLD

TrEMBL top hits

e value

%identity

Alignment

A0A097IYN6 BHLH transcription factor

2.8e-33

68.57

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Query:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE
        +A  G TE LNSS+R S VVR+K+ +GIQVVLDTA K RLP+S  +  L+ EG EIL+CISN+LNER IHTIECQP++N+DGCYPTID S LQHKL NLE
Subjt:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE

Query:  YFPLD
        Y+PLD
Subjt:  YFPLD

A0A1S4E6V7 transcription factor bHLH120-like

5.1e-35

71.43

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Query:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE
        M  +G TE LNSS+RDSVVVR+K+ +GIQVVLDTA KHRLP+S  +  L+ EG EIL+CISN+LNER IHTIECQ I+ +DGCYPTIDAS LQHKL NLE
Subjt:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE

Query:  YFPLD
        Y+PLD
Subjt:  YFPLD

A0A5A7TN30 Transcription factor bHLH120-like protein

5.1e-35

71.43

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Query:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE
        M  +G TE LNSS+RDSVVVR+K+ +GIQVVLDTA KHRLP+S  +  L+ EG EIL+CISN+LNER IHTIECQ I+ +DGCYPTIDAS LQHKL NLE
Subjt:  MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLE

Query:  YFPLD
        Y+PLD
Subjt:  YFPLD

A0A6J1E8G7 transcription factor bHLH118-like

1.2e-31

71.84

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Query:  SVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLEYF
        +VG+ E LNSS+RDSVVVRSKN LGIQVVLDT  +HRLP+SNIL VL  EG EILSCI+ K+NER +HTIECQ  V +DG YP+ID  ELQHKL NLEY 
Subjt:  SVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLEYF

Query:  PLD
        PLD
Subjt:  PLD

A0A6J1I182 transcription factor bHLH120-like

5.3e-32

69.61

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Query:  VGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLEYFP
        VG  E LNSS+RDSVVV S N LGIQVVLDTAI+HRLP+S+IL VL+ EG EI+SCI+ K+NER +HTIECQ +V NDGCYP+ID  EL+H+L NLEY P
Subjt:  VGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLEYFP

Query:  LD
        L+
Subjt:  LD

SwissProt top hits

e value

%identity

Alignment

Q9FLI0 Transcription factor bHLH120

3.4e-04

41.07

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Query:  PISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKL
        P+S +L VL G+G E++S ++ ++NERL++TI+ +  VN+  C+   D + LQ KL
Subjt:  PISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKL

Q9STJ6 Transcription factor bHLH126

2.6e-04

36.11

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Query:  GIQVVL--DTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKL
        G++VV+  +++    LP+S +L  +  +G E++S  + ++N+RL+HTI+ +  VN+ GC   ID   LQ KL
Subjt:  GIQVVL--DTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKL

Arabidopsis top hits

e value

%identity

Alignment

AT4G25410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

1.9e-05

36.11

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Query:  GIQVVL--DTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKL
        G++VV+  +++    LP+S +L  +  +G E++S  + ++N+RL+HTI+ +  VN+ GC   ID   LQ KL
Subjt:  GIQVVL--DTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKL

AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

2.4e-05

41.07

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Query:  PISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKL
        P+S +L VL G+G E++S ++ ++NERL++TI+ +  VN+  C+   D + LQ KL
Subjt:  PISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKL

Sequences

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CDS sequence

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ATGGCCTCCGTCGGTATAACAGAAATGCTTAATTCCTCAAAAAGAGATTCGGTGGTGGTGAGGTCGAAAAATGAATTAGGAATTCAAGTTGTTTTAGACACTGCCATAAA
ACACAGACTTCCTATCTCCAACATTCTTCATGTTTTACTTGGCGAAGGATTCGAAATCCTCAGCTGCATATCCAACAAACTGAATGAGAGGTTAATTCACACCATAGAAT
GCCAACCTATTGTAAATAATGATGGTTGCTATCCAACCATTGATGCGTCTGAGCTTCAGCATAAGTTATGGAATTTAGAATATTTTCCTTTAGATTAA

mRNA sequence

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Protein sequence

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MASVGITEMLNSSKRDSVVVRSKNELGIQVVLDTAIKHRLPISNILHVLLGEGFEILSCISNKLNERLIHTIECQPIVNNDGCYPTIDASELQHKLWNLEYFPLD

CaUC01G003380 (gene) of Watermelon (USVL246-FR2) v1 genome