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CaUC01G003390 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G003390
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionBHLH transcription factor
Genome locationCiama_Chr01:3662394..3662705
RNA-Seq ExpressionCaUC01G003390
SyntenyCaUC01G003390
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:2000112 - regulation of cellular macromolecule biosynthetic process (biological process)
GO:0090575 - RNA polymerase II transcription factor complex (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR015660 - Achaete-scute transcription factor-related
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042815.1 transcription factor bHLH120-like protein [Cucumis melo var. makuwa]1.4e-2874.51Show/hide
Query:  FNSKSPFSFDFGDDLFTLPSLPSSS-ISPPLETD-NVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC
        FN +SPFSFD G+DL  LPSLPSSS ISPPL+ D N VSQK +NGRRKK +PNT N++ G+E LDE+KK+K+IHRDVERQRRQEMSSLYTTLRSLLP E 
Subjt:  FNSKSPFSFDFGDDLFTLPSLPSSS-ISPPLETD-NVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC

Query:  LK
        LK
Subjt:  LK

KAG6579464.1 Transcription factor basic helix-loop-helix 126, partial [Cucurbita argyrosperma subsp. sororia]1.2e-1959.8Show/hide
Query:  MEFNSKSPFSFDFGDDLFTLPSLPSSSISPPLETDNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC
        MEFN +SPFSFDFGD+LF LP L       PLE  N+ S+K +  RR+K  PNT N+EN     +E+K++K++HRDVERQRRQEMSSLY++LRSLLP E 
Subjt:  MEFNSKSPFSFDFGDDLFTLPSLPSSSISPPLETDNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC

Query:  LK
        LK
Subjt:  LK

NP_001295816.1 transcription factor bHLH118-like [Cucumis sativus]3.6e-2772.55Show/hide
Query:  FNSKSPFSFDFGDDLFTLPSLPSSS-ISPPLET-DNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC
        FN++SPFSFD G+DL  LPSLPSSS ISPPL+   N VSQK +NGRRKK +PNT N++ G+E  DE+KK+K+IHRDVERQRRQEMSSLYTTLRSLLP E 
Subjt:  FNSKSPFSFDFGDDLFTLPSLPSSS-ISPPLET-DNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC

Query:  LK
        LK
Subjt:  LK

XP_022969885.1 transcription factor bHLH120-like [Cucurbita maxima]5.2e-1855.88Show/hide
Query:  MEFNSKSPFSFDFGDDLFTLPSLPSSSISPPLETDNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC
        MEFN +SPFSF+FGD+LF LP +       PLE  N+ S+K +   R++  PNT N+EN     +E+K++K++HRDVERQRRQEMSSLY++LRSLLP E 
Subjt:  MEFNSKSPFSFDFGDDLFTLPSLPSSSISPPLETDNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC

Query:  LK
        LK
Subjt:  LK

XP_038875626.1 transcription factor bHLH118-like [Benincasa hispida]8.2e-2468.27Show/hide
Query:  MEFNSKSPFSFDFGDDLFTLPSLPSSS-ISPPLET-DNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPF
        M+FN +SP SFD GDDL  LPSLPSSS IS P++   N VSQ ++NGRRKK +PNT  N+NG E+ +E +K+K+IHRDVERQRRQEMSSLYTTLRSLLP 
Subjt:  MEFNSKSPFSFDFGDDLFTLPSLPSSS-ISPPLET-DNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPF

Query:  ECLK
        E LK
Subjt:  ECLK

TrEMBL top hitse value%identityAlignment
A0A097IYN6 BHLH transcription factor1.7e-2772.55Show/hide
Query:  FNSKSPFSFDFGDDLFTLPSLPSSS-ISPPLET-DNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC
        FN++SPFSFD G+DL  LPSLPSSS ISPPL+   N VSQK +NGRRKK +PNT N++ G+E  DE+KK+K+IHRDVERQRRQEMSSLYTTLRSLLP E 
Subjt:  FNSKSPFSFDFGDDLFTLPSLPSSS-ISPPLET-DNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC

Query:  LK
        LK
Subjt:  LK

A0A5A7TLF7 Transcription factor bHLH36-like4.0e-1653.21Show/hide
Query:  NSKSPFSFDFGDDLFTLPSLPS------SSISPPLETDN----VVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLR
        N +SPFSFD GD+L  LPSL              LE +N     VS + +NGRRKK   NT ++++ E   +E KK+K++HRDVERQRRQEMSSLY+TLR
Subjt:  NSKSPFSFDFGDDLFTLPSLPS------SSISPPLETDN----VVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLR

Query:  SLLPFECLK
        SLLP E LK
Subjt:  SLLPFECLK

A0A5A7TN30 Transcription factor bHLH120-like protein7.0e-2974.51Show/hide
Query:  FNSKSPFSFDFGDDLFTLPSLPSSS-ISPPLETD-NVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC
        FN +SPFSFD G+DL  LPSLPSSS ISPPL+ D N VSQK +NGRRKK +PNT N++ G+E LDE+KK+K+IHRDVERQRRQEMSSLYTTLRSLLP E 
Subjt:  FNSKSPFSFDFGDDLFTLPSLPSSS-ISPPLETD-NVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC

Query:  LK
        LK
Subjt:  LK

A0A6J1E8G7 transcription factor bHLH118-like3.1e-1651.79Show/hide
Query:  MEFNSKSPFSFDFGDDLFTLPSLPS----------SSISPPLETDNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYT
        MEFN +SP SFD GD+LF LPS+ S           SIS PLE D   S++ +   R+   PN  N+EN     +++K++K++HRDVERQRRQEMSSLY+
Subjt:  MEFNSKSPFSFDFGDDLFTLPSLPS----------SSISPPLETDNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYT

Query:  TLRSLLPFECLK
        +LRSLLP E LK
Subjt:  TLRSLLPFECLK

A0A6J1I182 transcription factor bHLH120-like2.5e-1855.88Show/hide
Query:  MEFNSKSPFSFDFGDDLFTLPSLPSSSISPPLETDNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC
        MEFN +SPFSF+FGD+LF LP +       PLE  N+ S+K +   R++  PNT N+EN     +E+K++K++HRDVERQRRQEMSSLY++LRSLLP E 
Subjt:  MEFNSKSPFSFDFGDDLFTLPSLPSSSISPPLETDNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFEC

Query:  LK
        LK
Subjt:  LK

SwissProt top hitse value%identityAlignment
Q9FLI0 Transcription factor bHLH1207.5e-0450Show/hide
Query:  EETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK
        +E  + +K++KL+HR++ERQRRQEM+ L+ +LRS LP + +K
Subjt:  EETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK

Q9FLI1 Transcription factor bHLH362.6e-0465.62Show/hide
Query:  KLIHRDVERQRRQEMSSLYTTLRSLLPFECLK
        K++HR+ ERQRRQEM+SLY +LRSLLP   +K
Subjt:  KLIHRDVERQRRQEMSSLYTTLRSLLPFECLK

Q9LQ08 Transcription factor bHLH1255.2e-0557.89Show/hide
Query:  DERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK
        D+R+ +K+ HRD+ERQRRQE+SSL+  LR+LLPF+ ++
Subjt:  DERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK

Q9STJ6 Transcription factor bHLH1262.1e-0660.98Show/hide
Query:  ETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK
        ET D +KK+KL+HRD+ERQRRQEM++L+ TLR+ LP + +K
Subjt:  ETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK

Q9STJ7 Transcription factor bHLH1184.4e-0459.38Show/hide
Query:  KLIHRDVERQRRQEMSSLYTTLRSLLPFECLK
        KL+H+++E++RRQEM+SLY +LRSLLP E ++
Subjt:  KLIHRDVERQRRQEMSSLYTTLRSLLPFECLK

Arabidopsis top hitse value%identityAlignment
AT1G62975.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.7e-0657.89Show/hide
Query:  DERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK
        D+R+ +K+ HRD+ERQRRQE+SSL+  LR+LLPF+ ++
Subjt:  DERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK

AT4G25400.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.1e-0559.38Show/hide
Query:  KLIHRDVERQRRQEMSSLYTTLRSLLPFECLK
        KL+H+++E++RRQEM+SLY +LRSLLP E ++
Subjt:  KLIHRDVERQRRQEMSSLYTTLRSLLPFECLK

AT4G25410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.5e-0760.98Show/hide
Query:  ETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK
        ET D +KK+KL+HRD+ERQRRQEM++L+ TLR+ LP + +K
Subjt:  ETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK

AT5G51780.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.8e-0565.62Show/hide
Query:  KLIHRDVERQRRQEMSSLYTTLRSLLPFECLK
        K++HR+ ERQRRQEM+SLY +LRSLLP   +K
Subjt:  KLIHRDVERQRRQEMSSLYTTLRSLLPFECLK

AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.3e-0550Show/hide
Query:  EETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK
        +E  + +K++KL+HR++ERQRRQEM+ L+ +LRS LP + +K
Subjt:  EETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCAATAGTAAGTCCCCCTTTTCATTTGATTTTGGAGATGACCTATTCACTCTGCCTTCTCTTCCATCGTCCTCTATCTCTCCGCCCTTGGAAACCGATAACGT
CGTGTCCCAAAAGAAAAGAAATGGCCGCCGGAAAAAGGCAGTACCCAACACTCAAAATAATGAAAATGGCGAAGAGACGCTGGACGAACGAAAAAAGAGGAAGTTAATAC
ATAGAGATGTGGAGAGGCAAAGAAGACAAGAAATGTCTTCTCTTTATACCACTCTTCGCTCACTTCTCCCGTTTGAATGTCTCAAGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCAATAGTAAGTCCCCCTTTTCATTTGATTTTGGAGATGACCTATTCACTCTGCCTTCTCTTCCATCGTCCTCTATCTCTCCGCCCTTGGAAACCGATAACGT
CGTGTCCCAAAAGAAAAGAAATGGCCGCCGGAAAAAGGCAGTACCCAACACTCAAAATAATGAAAATGGCGAAGAGACGCTGGACGAACGAAAAAAGAGGAAGTTAATAC
ATAGAGATGTGGAGAGGCAAAGAAGACAAGAAATGTCTTCTCTTTATACCACTCTTCGCTCACTTCTCCCGTTTGAATGTCTCAAGATATGA
Protein sequenceShow/hide protein sequence
MEFNSKSPFSFDFGDDLFTLPSLPSSSISPPLETDNVVSQKKRNGRRKKAVPNTQNNENGEETLDERKKRKLIHRDVERQRRQEMSSLYTTLRSLLPFECLKI