; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC01G004060 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G004060
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTransmembrane protein
Genome locationCiama_Chr01:4499192..4523888
RNA-Seq ExpressionCaUC01G004060
SyntenyCaUC01G004060
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3475847.1 transmembrane protein [Gossypium australe]3.8e-1657.84Show/hide
Query:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPD-EGLGFVG-GHGLGLDIKEQ
        + +TLRSKLR  GML L+PK LAL+AVQR  AASRS RP  + QHG+TGG P V  TR   +LA TP LR SLGH P  D  G+G +G G GLGL + E+
Subjt:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPD-EGLGFVG-GHGLGLDIKEQ

Query:  TE
         E
Subjt:  TE

KAA3475848.1 transmembrane protein [Gossypium australe]2.2e-1659.05Show/hide
Query:  KTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDE--GLGFVGGHGLGLDIKEQTE
        +TLRSKLR  GML L+PKTLAL+AVQRQTAASRS RPS + QHG+TGG P+   T+ P +LA TP LR SLGH P  D   GLGF G     L ++ + E
Subjt:  KTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDE--GLGFVGGHGLGLDIKEQTE

Query:  VERDV
        V  DV
Subjt:  VERDV

KAF3492506.1 hypothetical protein DY000_02054766, partial [Brassica cretica]2.4e-1863.74Show/hide
Query:  KTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGL
        +TLR +LR  G   L+P+TLAL AVQRQTAAS SA P  ++QHG+TGGLP V S RP  +LAQTP LRVSLGHFP P+ GLG   G G GL
Subjt:  KTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGL

MBA0652094.1 hypothetical protein [Gossypium klotzschianum]5.5e-1543.42Show/hide
Query:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGLDIKEQTE
        + +TLRSKLR  GML L+PK LAL+AVQRQ AASRS RP  + QHG+TGG P V  T+   +LA TP LR SLGH P  D G+G   G GLGL+ +E+ +
Subjt:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGLDIKEQTE

Query:  V------ERDVKLVAQNASLDGSAKADCSFKISKAFNQ-------GAAWGHW
               E+   L+ +      S+KA   F   +  +Q          W +W
Subjt:  V------ERDVKLVAQNASLDGSAKADCSFKISKAFNQ-------GAAWGHW

MBA0768798.1 hypothetical protein [Gossypium trilobum]5.5e-1557Show/hide
Query:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGLDIKEQTE
        + +TLRSKLR  GML L+PK LAL+AVQRQ AASRS RP  + QHG+TGG P+V  T    +LA TP LR SLGH P  D G+G   G GLGL+ +E+ +
Subjt:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGLDIKEQTE

TrEMBL top hitse value%identityAlignment
A0A0A0KP81 Uncharacterized protein3.0e-1976.47Show/hide
Query:  DIKEQAEVERDVKLVAQNASLDGSAKADCSFKISKAFNQGAAWGHWGLADRKVDEAAKKLGADADFKG
        ++KEQA+VE D  LV QNAS +GSAKAD  FKISK  NQGAAWGHWGLAD +VDEAAKKLGAD DFKG
Subjt:  DIKEQAEVERDVKLVAQNASLDGSAKADCSFKISKAFNQGAAWGHWGLADRKVDEAAKKLGADADFKG

A0A5B6W3Q8 Transmembrane protein1.1e-1659.05Show/hide
Query:  KTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDE--GLGFVGGHGLGLDIKEQTE
        +TLRSKLR  GML L+PKTLAL+AVQRQTAASRS RPS + QHG+TGG P+   T+ P +LA TP LR SLGH P  D   GLGF G     L ++ + E
Subjt:  KTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDE--GLGFVGGHGLGLDIKEQTE

Query:  VERDV
        V  DV
Subjt:  VERDV

A0A5B6W432 Transmembrane protein1.8e-1657.84Show/hide
Query:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPD-EGLGFVG-GHGLGLDIKEQ
        + +TLRSKLR  GML L+PK LAL+AVQR  AASRS RP  + QHG+TGG P V  TR   +LA TP LR SLGH P  D  G+G +G G GLGL + E+
Subjt:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPD-EGLGFVG-GHGLGLDIKEQ

Query:  TE
         E
Subjt:  TE

A0A7J8UPC6 Uncharacterized protein (Fragment)2.7e-1543.42Show/hide
Query:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGLDIKEQTE
        + +TLRSKLR  GML L+PK LAL+AVQRQ AASRS RP  + QHG+TGG P V  T+   +LA TP LR SLGH P  D G+G   G GLGL+ +E+ +
Subjt:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGLDIKEQTE

Query:  V------ERDVKLVAQNASLDGSAKADCSFKISKAFNQ-------GAAWGHW
               E+   L+ +      S+KA   F   +  +Q          W +W
Subjt:  V------ERDVKLVAQNASLDGSAKADCSFKISKAFNQ-------GAAWGHW

A0A7J9E7L5 Uncharacterized protein2.7e-1557Show/hide
Query:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGLDIKEQTE
        + +TLRSKLR  GML L+PK LAL+AVQRQ AASRS RP  + QHG+TGG P+V  T    +LA TP LR SLGH P  D G+G   G GLGL+ +E+ +
Subjt:  MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGLDIKEQTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAAAACATTAAGGAGCAAGCTGAGGTGGAGAGGGATGTTAAGCTTGTTGCCCAAAACGCTAGCCTTGATGGCAGTGCAAAGGCAGACTGCAGCTTCAAGA
TCAGCTAGGCCTTCAACCAAGGTGCAGCATGGGGTCACTGGGGGCTTGCCAATCGTAATATCGACGAGGCCGCCGAGAAGCTTGGCACAAACGCCAATTTTAAGG
GTGTCCCTAGGGCACTTTCCATATCCAGATGAAGGGCTTGGCTTTGTGGGAGGGCATGGCTTGGGCTTGGACATTAAGGAGCAAACTGAGGTGGAGAGGGATGTT
AAGCTTGTTGCCCAAAACGCTAGCCTTGATGGCAGTGCAAAGGCAGACTGCAGCTTCAAGATCAGCAAGGCCTTCAACCAAGGTGCAGCATGGGGTCACTGGGGG
CTTGCCGATCGTAAGGTCGACGAGGCCGCCAAGAAGCTTGGCGCAGACGCCGATTTTAAGGACATTAAGGAGCAAGCTGAGGTGGAGAGGGATGTTAAGCTTGTT
GCCCAAAACGCTAGCCTTAATGGCAGTGCAAAGGCAGACTGCAGCTTCAAGATCTGCAAGGCCTTCAACCAAGGTGCAGCATGGGGTCACTGGGGGCTTGCCGAT
CGTAACGTCGACGAGGCCGCCGAGAAGCTTGGCACAGACGCCGATTTTAAGGACATTAAGGAGCAAGCTGAGGTGGAGAGGGATGTTAAGCTTGTTGCCCAAAAC
GCTAGCCTTGATGGCAGTGCAAAGGCAGACTGCAGCTTCAAGATCAGCAAGGCCTTCAACCAAGGTGCAGCATGGGGTCACTGGGGGCTTGCCGATCGTAAGGTC
GACGAGGCCGCCAAGAAGCTTGGCGCAGACGCCGATTTTAAGGGGAAGGAGATATTGAGTAATGAGTTCAACATGAAACTTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTAAAACATTAAGGAGCAAGCTGAGGTGGAGAGGGATGTTAAGCTTGTTGCCCAAAACGCTAGCCTTGATGGCAGTGCAAAGGCAGACTGCAGCTTCAAGA
TCAGCTAGGCCTTCAACCAAGGTGCAGCATGGGGTCACTGGGGGCTTGCCAATCGTAATATCGACGAGGCCGCCGAGAAGCTTGGCACAAACGCCAATTTTAAGG
GTGTCCCTAGGGCACTTTCCATATCCAGATGAAGGGCTTGGCTTTGTGGGAGGGCATGGCTTGGGCTTGGACATTAAGGAGCAAACTGAGGTGGAGAGGGATGTT
AAGCTTGTTGCCCAAAACGCTAGCCTTGATGGCAGTGCAAAGGCAGACTGCAGCTTCAAGATCAGCAAGGCCTTCAACCAAGGTGCAGCATGGGGTCACTGGGGG
CTTGCCGATCGTAAGGTCGACGAGGCCGCCAAGAAGCTTGGCGCAGACGCCGATTTTAAGGACATTAAGGAGCAAGCTGAGGTGGAGAGGGATGTTAAGCTTGTT
GCCCAAAACGCTAGCCTTAATGGCAGTGCAAAGGCAGACTGCAGCTTCAAGATCTGCAAGGCCTTCAACCAAGGTGCAGCATGGGGTCACTGGGGGCTTGCCGAT
CGTAACGTCGACGAGGCCGCCGAGAAGCTTGGCACAGACGCCGATTTTAAGGACATTAAGGAGCAAGCTGAGGTGGAGAGGGATGTTAAGCTTGTTGCCCAAAAC
GCTAGCCTTGATGGCAGTGCAAAGGCAGACTGCAGCTTCAAGATCAGCAAGGCCTTCAACCAAGGTGCAGCATGGGGTCACTGGGGGCTTGCCGATCGTAAGGTC
GACGAGGCCGCCAAGAAGCTTGGCGCAGACGCCGATTTTAAGGGGAAGGAGATATTGAGTAATGAGTTCAACATGAAACTTTCGTAA
Protein sequenceShow/hide protein sequence
MSKTLRSKLRWRGMLSLLPKTLALMAVQRQTAASRSARPSTKVQHGVTGGLPIVISTRPPRSLAQTPILRVSLGHFPYPDEGLGFVGGHGLGLDIKEQTEVERDV
KLVAQNASLDGSAKADCSFKISKAFNQGAAWGHWGLADRKVDEAAKKLGADADFKDIKEQAEVERDVKLVAQNASLNGSAKADCSFKICKAFNQGAAWGHWGLAD
RNVDEAAEKLGTDADFKDIKEQAEVERDVKLVAQNASLDGSAKADCSFKISKAFNQGAAWGHWGLADRKVDEAAKKLGADADFKGKEILSNEFNMKLS