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CaUC01G006090 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G006090
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCiama_Chr01:6580389..6581199
RNA-Seq ExpressionCaUC01G006090
SyntenyCaUC01G006090
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR007641 - RNA polymerase Rpb2, domain 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9613446.1 hypothetical protein IFM89_008293 [Coptis chinensis]5.6e-1268.25Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKIEFIIYI----SWFGNGKLAIN
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR++   ++ I    S +  G L IN
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKIEFIIYI----SWFGNGKLAIN
QWL15681.1 RNA polymerase beta subunit [Plantago nubicola]1.6e-1190.48Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR K+
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
YP_008964859.1 RNA polymerase beta subunit [Schwalbea americana]1.3e-1192.86Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR KI
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
YP_009404775.1 RNA polymerase beta subunit [Lobelia kauaensis]1.3e-1192.86Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR KI
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
YP_009868451.1 RNA polymerase beta subunit [Oroxylum indicum]1.3e-1192.86Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR KI
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
TrEMBL top hitse value%identityAlignment
A0A1Z2QZ71 DNA-directed RNA polymerase subunit beta6.1e-1292.86Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR KI
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
A0A2H4DWE6 DNA-directed RNA polymerase subunit beta7.9e-1290.48Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR K+
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
A0A411LBX0 DNA-directed RNA polymerase subunit beta7.9e-1290.48Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR K+
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
A0A6M8P965 DNA-directed RNA polymerase subunit beta6.1e-1292.86Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR KI
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
V6BQG7 DNA-directed RNA polymerase subunit beta6.1e-1292.86Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR KI
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
SwissProt top hitse value%identityAlignment
A6MM28 DNA-directed RNA polymerase subunit beta6.2e-1488.1Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR ++
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
A9LYH7 DNA-directed RNA polymerase subunit beta6.2e-1488.1Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR ++
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
Q3V542 DNA-directed RNA polymerase subunit beta6.2e-1488.1Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR ++
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
Q5QA72 DNA-directed RNA polymerase subunit beta6.2e-1488.1Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR ++
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
Q8S8X9 DNA-directed RNA polymerase subunit beta6.2e-1488.1Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        AKQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR ++
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta9.9e-1585.71Show/hide
Query:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI
        +KQGGQ V EMEVWALEGFGVAHILQEMLTYKSDHIRAR ++
Subjt:  AKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCTTGTTATCAAATCTATTCCTTTAAGAAAAACTCCCTATGATGATTCTTGGGTTTGGGCTAAGCAAGGTGGACAATGGGTGAGAGAAATGGAGGTTTGG
GCTTTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCTAAAGATAGAATTTATAATTTATATATCA
TGGTTTGGAAATGGGAAATTGGCAATTAACCTTGATCTTCAACATTTTCTCATTGAATCTGACTCCCTTGTTGTCATTGGGACTCTTAATGTTCCCCTTCTTACA
TAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCTTGTTATCAAATCTATTCCTTTAAGAAAAACTCCCTATGATGATTCTTGGGTTTGGGCTAAGCAAGGTGGACAATGGGTGAGAGAAATGGAGGTTTGG
GCTTTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCTAAAGATAGAATTTATAATTTATATATCA
TGGTTTGGAAATGGGAAATTGGCAATTAACCTTGATCTTCAACATTTTCTCATTGAATCTGACTCCCTTGTTGTCATTGGGACTCTTAATGTTCCCCTTCTTACA
TAA
Protein sequenceShow/hide protein sequence
MSLVIKSIPLRKTPYDDSWVWAKQGGQWVREMEVWALEGFGVAHILQEMLTYKSDHIRARLKIEFIIYISWFGNGKLAINLDLQHFLIESDSLVVIGTLNVPLLT