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CaUC01G006460 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G006460
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionextensin-like
Genome locationCiama_Chr01:7104623..7105060
RNA-Seq ExpressionCaUC01G006460
SyntenyCaUC01G006460
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601837.1 hypothetical protein SDJN03_07070, partial [Cucurbita argyrosperma subsp. sororia]5.5e-4274.48Show/hide
Query:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
        MLP N LLFL  LLLISPSS+SAA   R LDD     TPADPTVKC+PCEQN PSPPPP VYPSPPPPSPPPPDVV YYSPPPP KK+ K+ +CPPPP+P
Subjt:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP

Query:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV
        +FMYITGPPGDLYPIDQ+YNAA RR  +AAASAVVGL + G+L++
Subjt:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV

KAG7032543.1 hypothetical protein SDJN02_06592, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-4275.17Show/hide
Query:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
        MLP N LLFL  LLLISPSS+SAA   R LDD     TPADPTVKC+PCEQN PSPPPP VYPSPPPPSPPPPDVV YYSPPPP KK+ K+ +CPPPP+P
Subjt:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP

Query:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV
        +FMYITGPPGDLYPIDQ+YNAA RR  +AAASAVVGL +AG+L++
Subjt:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV

XP_004150475.1 leucine-rich repeat extensin-like protein 6 [Cucumis sativus]8.5e-5184.14Show/hide
Query:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
        MLPL FLLFLNFLLLISPSS   +   R LDDT   TTP DP VKCAPCEQN PSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
Subjt:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP

Query:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV
        SFMYITGPPGDLYPIDQ YNAAGRRS    A+ VVG+VLAGLLLV
Subjt:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV

XP_008467156.1 PREDICTED: extensin-like [Cucumis melo]4.5e-5285.52Show/hide
Query:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
        MLPL FLLFLNFLLLISPSS   +A  R LDDT   TTP DP VKCAPCEQN PSPPPP+VYPSPPPPSPPPPDVVPYYSPPPPKKKEPK+PNCPPPPSP
Subjt:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP

Query:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV
        SFMYITGPPGDLYPIDQNYNAAGRRS AAAA   VG+VLAGLLLV
Subjt:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV

XP_022989990.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.2e-4476.55Show/hide
Query:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
        MLP N LLFL  LLLISPSS+SAA   R LDDT +  TPADPTVKC+PCEQN PSPPPP VYPSPPPPSPPPPDVV YYSPPPP KK+ K+ +CPPPPSP
Subjt:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP

Query:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV
        +FMYITGPPGDLYPIDQNYNAA RR  +AAASAV+GL +AG+L++
Subjt:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV

TrEMBL top hitse value%identityAlignment
A0A0A0KPJ1 Uncharacterized protein4.1e-5184.14Show/hide
Query:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
        MLPL FLLFLNFLLLISPSS   +   R LDDT   TTP DP VKCAPCEQN PSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
Subjt:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP

Query:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV
        SFMYITGPPGDLYPIDQ YNAAGRRS    A+ VVG+VLAGLLLV
Subjt:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV

A0A1S3CT22 extensin-like2.2e-5285.52Show/hide
Query:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
        MLPL FLLFLNFLLLISPSS   +A  R LDDT   TTP DP VKCAPCEQN PSPPPP+VYPSPPPPSPPPPDVVPYYSPPPPKKKEPK+PNCPPPPSP
Subjt:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP

Query:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV
        SFMYITGPPGDLYPIDQNYNAAGRRS AAAA   VG+VLAGLLLV
Subjt:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV

A0A6J1DDL2 acrosin6.6e-4172.97Show/hide
Query:  MLPLNFLLFLNFLLLISPSSTSAA-APARLLDDT-TIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPP
        MLPL  LLFLN LLLISPS+T+AA A AR LD+   +P+T  DPTVKCAPC+QN PSPPPP +YPSPPPPSPPPPDV+PYYSPPPPKK +  + NCPPPP
Subjt:  MLPLNFLLFLNFLLLISPSSTSAA-APARLLDDT-TIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPP

Query:  -SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV
          PSF YITGPPGDLYPIDQ+YNAA R  T+AAA+AVVGL L GL +V
Subjt:  -SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV

A0A6J1GMY1 extensin2.7e-4274.48Show/hide
Query:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
        MLP N LLFL  LLLISPSS+SAA   R LDD     TPADPTVKC+PCEQN PSPPPP VYPSPPPPSPPPPDVV YYSPPPP KK+ K+ +CPPPP+P
Subjt:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP

Query:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV
        +FMYITGPPGDLYPIDQ+YNAA RR  + AASAVVGL +AG+L++
Subjt:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV

A0A6J1JNW0 leucine-rich repeat extensin-like protein 35.8e-4576.55Show/hide
Query:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP
        MLP N LLFL  LLLISPSS+SAA   R LDDT +  TPADPTVKC+PCEQN PSPPPP VYPSPPPPSPPPPDVV YYSPPPP KK+ K+ +CPPPPSP
Subjt:  MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSP

Query:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV
        +FMYITGPPGDLYPIDQNYNAA RR  +AAASAV+GL +AG+L++
Subjt:  SFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein5.6e-0848.65Show/hide
Query:  ADPTVKCAPCEQNQPSPPPPVVYPSPPP----PSPPPPDVVPYYSPPPPKKKE-PKSPNCPPPPSPSFMYI-TGPPGDLYPIDQNYNAAGRRSTAAAASA
        A+  V C PC QNQP PP     PSPPP    PSPPPP      SPPPPKK   P SP  PPPP P   Y+ T PPGDLYPI+  Y AA     A  + +
Subjt:  ADPTVKCAPCEQNQPSPPPPVVYPSPPP----PSPPPPDVVPYYSPPPPKKKE-PKSPNCPPPPSPSFMYI-TGPPGDLYPIDQNYNAAGRRSTAAAASA

Query:  VVGLVLAGLLL
        V+ L + G+++
Subjt:  VVGLVLAGLLL

AT1G23040.1 hydroxyproline-rich glycoprotein family protein6.3e-1245.8Show/hide
Query:  LLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAP-CEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSPSFMYITGPPGDL
        L+   SS+ A+  AR LD+        DP +KC+P C QN P P PP   PSPPPP+ PPP  +P   PPPPKK    S  CPPPP  +F+YITGPPG+L
Subjt:  LLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAP-CEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSPSFMYITGPPGDL

Query:  YPIDQNYNAAGRRSTAAAASAVVGLVLAGLL
        YP+D+ + AA  +S       + GL+  G++
Subjt:  YPIDQNYNAAGRRSTAAAASAVVGLVLAGLL

AT1G70990.1 proline-rich family protein1.0e-0939.86Show/hide
Query:  LNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSPSFM
        L  ++FL F ++I+ S           D +T      DP +KC PC QN P        PSPPPPSPPPP       PPP     PK   CPPPPS +++
Subjt:  LNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSPSFM

Query:  YITGPPGDLYPIDQNYNAAGRRS-TAAAASAVVGLVLAGLLLV
        Y+TGPPG+LYPIDQ + AA  +S T    S ++   +   L++
Subjt:  YITGPPGDLYPIDQNYNAAGRRS-TAAAASAVVGLVLAGLLLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCTCTCAATTTTCTCCTTTTTCTCAATTTCCTCCTCCTCATTTCCCCTTCCTCCACCTCCGCCGCCGCCCCCGCCCGCCTCCTCGACGACACCACCATCCCGAC
CACCCCCGCCGACCCCACCGTCAAGTGCGCCCCATGTGAACAGAACCAGCCATCTCCTCCTCCGCCGGTAGTCTACCCATCGCCCCCGCCGCCGTCTCCTCCGCCGCCCG
ATGTCGTTCCCTACTACTCTCCCCCACCCCCGAAGAAGAAGGAGCCCAAGAGCCCCAACTGCCCTCCGCCGCCGTCTCCCTCGTTCATGTACATAACCGGCCCTCCCGGC
GACCTTTATCCGATCGACCAGAATTATAACGCCGCCGGCCGGAGATCCACCGCCGCCGCGGCCTCCGCCGTGGTTGGGCTTGTTCTAGCCGGACTTCTGTTGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCTCTCAATTTTCTCCTTTTTCTCAATTTCCTCCTCCTCATTTCCCCTTCCTCCACCTCCGCCGCCGCCCCCGCCCGCCTCCTCGACGACACCACCATCCCGAC
CACCCCCGCCGACCCCACCGTCAAGTGCGCCCCATGTGAACAGAACCAGCCATCTCCTCCTCCGCCGGTAGTCTACCCATCGCCCCCGCCGCCGTCTCCTCCGCCGCCCG
ATGTCGTTCCCTACTACTCTCCCCCACCCCCGAAGAAGAAGGAGCCCAAGAGCCCCAACTGCCCTCCGCCGCCGTCTCCCTCGTTCATGTACATAACCGGCCCTCCCGGC
GACCTTTATCCGATCGACCAGAATTATAACGCCGCCGGCCGGAGATCCACCGCCGCCGCGGCCTCCGCCGTGGTTGGGCTTGTTCTAGCCGGACTTCTGTTGGTTTAA
Protein sequenceShow/hide protein sequence
MLPLNFLLFLNFLLLISPSSTSAAAPARLLDDTTIPTTPADPTVKCAPCEQNQPSPPPPVVYPSPPPPSPPPPDVVPYYSPPPPKKKEPKSPNCPPPPSPSFMYITGPPG
DLYPIDQNYNAAGRRSTAAAASAVVGLVLAGLLLV