; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC01G008600 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G008600
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCiama_Chr01:9778825..9780745
RNA-Seq ExpressionCaUC01G008600
SyntenyCaUC01G008600
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575949.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.6e-9776.86Show/hide
Query:  MVSKTV----SSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQ
        MVSKTV    SS+LSP PSK KLSS  LFT P  IASS+PQNPSP  ++SP ++SKP    VSP    + STT + F +R RTFLQN KTGNFT SEA Q
Subjt:  MVSKTV----SSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQ

Query:  FFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRI
        FFDL M ANPTPAMSSFNL+L GLAK KHYSEV +LYYR+SLAGLLPN ITLN+L+NCLCNVNR+SEGLAAMAGIIRRG+ PN VTYTSLIKGLCMEHRI
Subjt:  FFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRI

Query:  GEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN
         EATRLFMRMQKLGC P+VITYGTLIKGLC+TGNTNIALKLHEEMLNGTGRYGI+
Subjt:  GEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN

KAG7014482.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-9776.86Show/hide
Query:  MVSKTV----SSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQ
        MVSKTV    SS+LSP PSK KLSS  LFT P  IASS+PQNPSP  ++SP ++SKP    VSP    + STT + F +R RTFLQN KTGNFT SEA Q
Subjt:  MVSKTV----SSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQ

Query:  FFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRI
        FFDL M ANPTPAMSSFNL+L GLAK KHYSEV +LYYR+SLAGLLPN ITLN+L+NCLCNVNR+SEGLAAMAGIIRRG+ PN VTYTSLIKGLCMEHRI
Subjt:  FFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRI

Query:  GEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN
         EATRLFMRMQKLGC P+VITYGTLIKGLC+TGNTNIALKLHEEMLNGTGRYGI+
Subjt:  GEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN

XP_022953742.1 putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Cucurbita moschata]1.3e-9777.2Show/hide
Query:  VSKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLS
        V+  +SS+LSP PSK KLSS  LFT P  IASS+PQNPSP  ++SP ++SKP    VSP    + STT +SF  R RTFLQN KTGNFT SEALQFFDL 
Subjt:  VSKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLS

Query:  MNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATR
        M ANPTPAMSSFNL+L GLAK KHYSEV +LYYR+SLAGLLPN ITLN+L+NCLCNVNR+SEGLAAMAGIIRRG+ PN VTYTSLIKGLCMEHRI EATR
Subjt:  MNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATR

Query:  LFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN
        LFMRMQKLGC P+VITYGTLIKGLC+TGNTNIALKLHEEMLNGTGRYGI+
Subjt:  LFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN

XP_022992036.1 pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita maxima]1.0e-9978.04Show/hide
Query:  MVSKTVSSALS----PPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQ
        MVSKTV+SA+S    P PSK KLSS  LFTHP  IASS PQNPSP +++SP ++SKP    VSP    + STT +SF +R RTFLQN KTGNFT SEALQ
Subjt:  MVSKTVSSALS----PPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQ

Query:  FFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRI
        FFDL M ANPTPAMSSFNL+L GLAK KHYSEV +LYYR+SLAGLLPN ITLN+L+NCLCNVNR+SEGLAAMAGIIRRGY PN VTYTSLIKGLCMEHRI
Subjt:  FFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRI

Query:  GEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN
         EATRLFMRMQKLGC P+VITYGTLIKGLC+TGNTNIALKLHEEMLNGTGRYGI+
Subjt:  GEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN

XP_038874245.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida]9.9e-10379.61Show/hide
Query:  MVSKTVSSA----LSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLS---KPTVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQ
        MVSKTV+SA    LSP PSK KLSS  LFTHPQ +ASS+PQNP P  +KSP +LS   K TVSP   P+ ST+ +SFQ+R RTFL N KTGNFTASE LQ
Subjt:  MVSKTVSSA----LSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLS---KPTVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQ

Query:  FFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRI
        FFDL M+ANPTPAM+SFNL+L GLAKIKHYSEVFQ+YYR+SLAGLLPN IT N+L+NCLCNVNRVSEGLAAMAGIIRRGYTPN VTYTSLIKGLCMEHRI
Subjt:  FFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRI

Query:  GEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN
         EATRLFMRMQKLGC P+VITYGTLIKGLC+TGNTNIALKLHEEMLNGTG YGIN
Subjt:  GEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN

TrEMBL top hitse value%identityAlignment
A0A1S4DYL3 pentatricopeptide repeat-containing protein At1g63330-like isoform X31.1e-7061.79Show/hide
Query:  SKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKPTVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNAN
        SKTV SA S    +P LSS  LFTH   I SS+PQ  SP   KS H+           P+N  T +S QQ+   FL N KTGN TA++A  FF L M +N
Subjt:  SKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKPTVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNAN

Query:  PTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMR
        PTP +SSF  +LSGL KIKHYS+VF LY ++ L+GL P+  TLN+L+NCLCN+NRV EGLA MAGI+RRGY P+ VTYT+LIKGLCMEHRI +AT LF R
Subjt:  PTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMR

Query:  MQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN
        MQKLGC P+ ITYGTLIKGLCRTGN ++ALKLH+EMLN T RYGIN
Subjt:  MQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN

A0A5D3CCW0 Pentatricopeptide repeat-containing protein1.7e-7162.2Show/hide
Query:  SKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKPTVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNAN
        SKTV SA S    +P LSS  LFTH   I SS+PQ  SP   KS H+           P+N  T +S QQ+   FL N KTGN TA++A  FF L M +N
Subjt:  SKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKPTVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNAN

Query:  PTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMR
        PTP +SSF  +LSGL KIKHYS+VF LY ++ L+GL P+  TLN+L+NCLCN+NRV EGLA MAGI+RRGY P+ VTYT+LIKGLCMEHRI +AT LF R
Subjt:  PTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMR

Query:  MQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN
        MQKLGC P+ ITYGTLIKGLCRTGN ++ALKLH+EMLN TGRYGIN
Subjt:  MQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN

A0A6J1DSW3 pentatricopeptide repeat-containing protein At1g63330-like2.0e-9375Show/hide
Query:  MVSKTVSSA------LSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLS---KPTVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEA
        MVSK+V+SA       S  P+K KLSS  LFT    I SS+PQ    ++SK P LLS   KPTVSP   P+  TTG+SFQ RHRTFLQN KTGN TA+EA
Subjt:  MVSKTVSSA------LSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLS---KPTVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEA

Query:  LQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEH
        LQFFDL +   PTPAMSSFNL+L GLAKIKHYSEV  LY R+SLAG+LPN ITLN+L+NCLCNVNRVSEGLAAMAGIIRRGY PN VTYTSLIKGLCMEH
Subjt:  LQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEH

Query:  RIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGI
        RI EATRLFMRMQKLGC P+VITYGTLIKGLC+TGNTNIALKLHEEMLNGTGRYGI
Subjt:  RIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGI

A0A6J1GP31 putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial6.1e-9877.2Show/hide
Query:  VSKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLS
        V+  +SS+LSP PSK KLSS  LFT P  IASS+PQNPSP  ++SP ++SKP    VSP    + STT +SF  R RTFLQN KTGNFT SEALQFFDL 
Subjt:  VSKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLS

Query:  MNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATR
        M ANPTPAMSSFNL+L GLAK KHYSEV +LYYR+SLAGLLPN ITLN+L+NCLCNVNR+SEGLAAMAGIIRRG+ PN VTYTSLIKGLCMEHRI EATR
Subjt:  MNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATR

Query:  LFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN
        LFMRMQKLGC P+VITYGTLIKGLC+TGNTNIALKLHEEMLNGTGRYGI+
Subjt:  LFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN

A0A6J1JSG4 pentatricopeptide repeat-containing protein At1g63330-like5.0e-10078.04Show/hide
Query:  MVSKTVSSALS----PPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQ
        MVSKTV+SA+S    P PSK KLSS  LFTHP  IASS PQNPSP +++SP ++SKP    VSP    + STT +SF +R RTFLQN KTGNFT SEALQ
Subjt:  MVSKTVSSALS----PPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKP---TVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQ

Query:  FFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRI
        FFDL M ANPTPAMSSFNL+L GLAK KHYSEV +LYYR+SLAGLLPN ITLN+L+NCLCNVNR+SEGLAAMAGIIRRGY PN VTYTSLIKGLCMEHRI
Subjt:  FFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRI

Query:  GEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN
         EATRLFMRMQKLGC P+VITYGTLIKGLC+TGNTNIALKLHEEMLNGTGRYGI+
Subjt:  GEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGIN

SwissProt top hitse value%identityAlignment
P0C7Q7 Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial6.6e-2531.43Show/hide
Query:  STTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLA
        S   + F++R R+ + + K       +A+  F   + + P P++  F+   S +A+ K ++ V     ++ L G+  N+ TLN+++NC C   +     +
Subjt:  STTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLA

Query:  AMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEM
         +  +++ GY P+T T+ +LIKGL +E ++ EA  L  RM + GC PDV+TY +++ G+CR+G+T++AL L  +M
Subjt:  AMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEM

Q0WKV3 Pentatricopeptide repeat-containing protein At1g12300, mitochondrial2.4e-2736.93Show/hide
Query:  STTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLA
        S   LS+++R R+ L + K     A +A+  F   +++ P P +  F+ + S +AK K Y  V  L  ++ L G+  NL TL++++NC C   ++    +
Subjt:  STTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLA

Query:  AMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML
        AM  II+ GY PNT+T+++LI GLC+E R+ EA  L  RM ++G  PD+IT  TL+ GLC +G    A+ L ++M+
Subjt:  AMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML

Q9ASZ8 Pentatricopeptide repeat-containing protein At1g126207.3e-2434.3Show/hide
Query:  LSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAG
        +S+++R R+ + + K       +A+  F     + P P +  F+ + S +A+ K Y  V  L  ++ L G+  NL TL++++NC C   ++S   +AM  
Subjt:  LSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAG

Query:  IIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML
        II+ GY P+TVT+++LI GLC+E R+ EA  L  RM ++G  P +IT   L+ GLC  G  + A+ L + M+
Subjt:  IIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML

Q9LPX2 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial8.1e-2331.79Show/hide
Query:  SFQQRHRTFLQNYKTG--NFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMA
        +F  R+ ++     +G     A +A+  F   + + P P +  FN + S +AK K Y  V  L  ++   G+  ++ TL++++NC C   ++S   + M 
Subjt:  SFQQRHRTFLQNYKTG--NFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMA

Query:  GIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML
         I++ GY P+TV + +L+ GLC+E R+ EA  L  RM ++G  P +IT  TL+ GLC  G  + A+ L + M+
Subjt:  GIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML

Q9SI78 Pentatricopeptide repeat-containing protein At1g627204.7e-2333.54Show/hide
Query:  RTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYT
        RTF  + K  +    E +  F   + + P P++  F+ VLS +AK K+Y  V  L++ + + G+  +L + N+++NCLC  +R    L+ +  +++ GY 
Subjt:  RTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYT

Query:  PNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEM
        P+ VT +SLI G C  +R+ +A  L  +M+++G  PDV+ Y T+I G C+ G  N A++L + M
Subjt:  PNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEM

Arabidopsis top hitse value%identityAlignment
AT1G12300.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.7e-2836.93Show/hide
Query:  STTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLA
        S   LS+++R R+ L + K     A +A+  F   +++ P P +  F+ + S +AK K Y  V  L  ++ L G+  NL TL++++NC C   ++    +
Subjt:  STTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLA

Query:  AMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML
        AM  II+ GY PNT+T+++LI GLC+E R+ EA  L  RM ++G  PD+IT  TL+ GLC +G    A+ L ++M+
Subjt:  AMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML

AT1G12620.1 Pentatricopeptide repeat (PPR) superfamily protein5.2e-2534.3Show/hide
Query:  LSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAG
        +S+++R R+ + + K       +A+  F     + P P +  F+ + S +A+ K Y  V  L  ++ L G+  NL TL++++NC C   ++S   +AM  
Subjt:  LSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAG

Query:  IIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML
        II+ GY P+TVT+++LI GLC+E R+ EA  L  RM ++G  P +IT   L+ GLC  G  + A+ L + M+
Subjt:  IIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML

AT1G12700.1 ATP binding;nucleic acid binding;helicases4.7e-2631.43Show/hide
Query:  STTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLA
        S   + F++R R+ + + K       +A+  F   + + P P++  F+   S +A+ K ++ V     ++ L G+  N+ TLN+++NC C   +     +
Subjt:  STTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLA

Query:  AMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEM
         +  +++ GY P+T T+ +LIKGL +E ++ EA  L  RM + GC PDV+TY +++ G+CR+G+T++AL L  +M
Subjt:  AMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEM

AT1G12775.1 Pentatricopeptide repeat (PPR) superfamily protein5.7e-2431.79Show/hide
Query:  SFQQRHRTFLQNYKTG--NFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMA
        +F  R+ ++     +G     A +A+  F   + + P P +  FN + S +AK K Y  V  L  ++   G+  ++ TL++++NC C   ++S   + M 
Subjt:  SFQQRHRTFLQNYKTG--NFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMA

Query:  GIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML
         I++ GY P+TV + +L+ GLC+E R+ EA  L  RM ++G  P +IT  TL+ GLC  G  + A+ L + M+
Subjt:  GIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEML

AT1G62720.1 Pentatricopeptide repeat (PPR-like) superfamily protein3.4e-2433.54Show/hide
Query:  RTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYT
        RTF  + K  +    E +  F   + + P P++  F+ VLS +AK K+Y  V  L++ + + G+  +L + N+++NCLC  +R    L+ +  +++ GY 
Subjt:  RTFLQNYKTGNFTASEALQFFDLSMNANPTPAMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYT

Query:  PNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEM
        P+ VT +SLI G C  +R+ +A  L  +M+++G  PDV+ Y T+I G C+ G  N A++L + M
Subjt:  PNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWPDVITYGTLIKGLCRTGNTNIALKLHEEM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCCAAGACTGTATCCTCCGCTCTTTCCCCACCTCCTTCCAAACCCAAGCTCTCGTCTCTGTTTCTCTTTACTCACCCACAAACAATTGCTTCTTCAGAT
CCCCAAAATCCATCTCCTACTACTTCCAAATCCCCTCATCTCCTCTCCAAACCCACTGTATCACCCCATTTTCCCCCCAAAAATTCAACTACAGGGCTCTCCTTT
CAACAACGGCATCGGACTTTCCTTCAGAATTACAAGACAGGTAATTTTACCGCATCAGAAGCATTACAATTCTTTGACCTATCGATGAATGCAAATCCTACCCCT
GCCATGTCTTCATTCAATCTTGTACTTAGTGGACTTGCTAAGATTAAGCACTACTCTGAGGTTTTTCAGCTGTATTATAGAATTAGCTTAGCCGGACTTCTGCCT
AATCTCATCACGCTTAATGTTTTGGTTAATTGCCTTTGTAATGTGAATCGGGTTAGTGAAGGTCTTGCAGCCATGGCGGGGATTATAAGGAGAGGTTATACTCCC
AATACAGTGACATATACGTCTTTGATTAAAGGCTTGTGTATGGAGCATAGGATTGGTGAAGCCACACGGTTGTTTATGAGAATGCAAAAGTTGGGTTGTTGGCCA
GATGTGATTACTTATGGGACTTTAATCAAAGGTCTTTGTCGAACAGGTAATACTAACATTGCACTTAAGTTGCATGAAGAAATGCTCAATGGGACTGGTCGTTAT
GGCATTAATTCCGCATTTGATGGATGGATGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCCAAGACTGTATCCTCCGCTCTTTCCCCACCTCCTTCCAAACCCAAGCTCTCGTCTCTGTTTCTCTTTACTCACCCACAAACAATTGCTTCTTCAGAT
CCCCAAAATCCATCTCCTACTACTTCCAAATCCCCTCATCTCCTCTCCAAACCCACTGTATCACCCCATTTTCCCCCCAAAAATTCAACTACAGGGCTCTCCTTT
CAACAACGGCATCGGACTTTCCTTCAGAATTACAAGACAGGTAATTTTACCGCATCAGAAGCATTACAATTCTTTGACCTATCGATGAATGCAAATCCTACCCCT
GCCATGTCTTCATTCAATCTTGTACTTAGTGGACTTGCTAAGATTAAGCACTACTCTGAGGTTTTTCAGCTGTATTATAGAATTAGCTTAGCCGGACTTCTGCCT
AATCTCATCACGCTTAATGTTTTGGTTAATTGCCTTTGTAATGTGAATCGGGTTAGTGAAGGTCTTGCAGCCATGGCGGGGATTATAAGGAGAGGTTATACTCCC
AATACAGTGACATATACGTCTTTGATTAAAGGCTTGTGTATGGAGCATAGGATTGGTGAAGCCACACGGTTGTTTATGAGAATGCAAAAGTTGGGTTGTTGGCCA
GATGTGATTACTTATGGGACTTTAATCAAAGGTCTTTGTCGAACAGGTAATACTAACATTGCACTTAAGTTGCATGAAGAAATGCTCAATGGGACTGGTCGTTAT
GGCATTAATTCCGCATTTGATGGATGGATGGATTGA
Protein sequenceShow/hide protein sequence
MVSKTVSSALSPPPSKPKLSSLFLFTHPQTIASSDPQNPSPTTSKSPHLLSKPTVSPHFPPKNSTTGLSFQQRHRTFLQNYKTGNFTASEALQFFDLSMNANPTP
AMSSFNLVLSGLAKIKHYSEVFQLYYRISLAGLLPNLITLNVLVNCLCNVNRVSEGLAAMAGIIRRGYTPNTVTYTSLIKGLCMEHRIGEATRLFMRMQKLGCWP
DVITYGTLIKGLCRTGNTNIALKLHEEMLNGTGRYGINSAFDGWMD