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CaUC01G009010 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G009010
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRNase H domain-containing protein
Genome locationCiama_Chr01:10651167..10651523
RNA-Seq ExpressionCaUC01G009010
SyntenyCaUC01G009010
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4366503.1 hypothetical protein F8388_003741 [Cannabis sativa]2.2e-0438.89Show/hide
Query:  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIEN
        G  +C     SS  L   P  AE +A+  GL+ AL+   +K QV SDC  A+N I +    +S  D  LEEI  LSCNF  V+F + + +
Subjt:  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIEN

KAF4400944.1 hypothetical protein G4B88_013785 [Cannabis sativa]2.2e-0438.89Show/hide
Query:  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIEN
        G  +C     SS  L   P  AE +A+  GL+ AL+   +K QV SDC  A+N I +    +S  D  LEEI  LSCNF  V+F + + +
Subjt:  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIEN

XP_031095241.1 uncharacterized protein LOC115999536 [Ipomoea triloba]1.3e-0437.18Show/hide
Query:  ASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYV
        +S +  + DP LAE +AI++ L +A  C ++KI + SDC    + + S  P LS A C L+E  +L  +F SV F ++
Subjt:  ASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYV

XP_031103207.1 uncharacterized protein LOC116006850 [Ipomoea triloba]1.2e-0531.58Show/hide
Query:  VGVLLYEIGMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYV
        V  ++Y+ G  + +   +SS+  + DP LAE +AI++ L +A+ C ++K+ V SDC    + + S    LS A C L++  +L  +F +V F+++
Subjt:  VGVLLYEIGMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYV

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]2.2e-0435.71Show/hide
Query:  VSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIENV
        V  SS++ V+ PPLAE   +  GLR      ++KI V+SDC+ A++         S    WLEEI ++S  F  + F Y+  N+
Subjt:  VSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIENV

TrEMBL top hitse value%identityAlignment
A0A6J1CNR4 uncharacterized protein LOC1110129501.4e-0446.48Show/hide
Query:  DPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSC-ADCWLEEIRDLSCNFTSVQFLYV
        DP +AE LA+ +GLR A     Q++Q ESD  Q +N +T EDP   C ++ WLE+IR L+ NF    FL+V
Subjt:  DPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSC-ADCWLEEIRDLSCNFTSVQFLYV

A0A6J1DZK3 uncharacterized protein LOC1110249684.0e-0438.95Show/hide
Query:  VGVLLYEIGMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYV
        VGVLL E   EI VG      ++V  P LA+ILAIR+GL  A      ++ VE+D  +A+N I  + P    A  W+E+IR  + +F  + F +V
Subjt:  VGVLLYEIGMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYV

A0A7J6F713 Uncharacterized protein1.1e-0438.89Show/hide
Query:  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIEN
        G  +C     SS  L   P  AE +A+  GL+ AL+   +K QV SDC  A+N I +    +S  D  LEEI  LSCNF  V+F + + +
Subjt:  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIEN

A0A7J6I094 RNase H domain-containing protein1.1e-0438.89Show/hide
Query:  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIEN
        G  +C     SS  L   P  AE +A+  GL+ AL+   +K QV SDC  A+N I +    +S  D  LEEI  LSCNF  V+F + + +
Subjt:  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIEN

A0A803NTU1 Uncharacterized protein1.8e-0438.89Show/hide
Query:  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIEN
        G  +C     SS  L   P  AE +AI  GL+ AL+   +K +V SDC  A+N I +    +S  D  LEEI  LSCNF  V+F + + +
Subjt:  GMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATGCAGCTTGGAAGGAAGACCCACCTTCAACAGGTTGGAGTTCTATTGTACGAGATTGGAATGGAAATTTGTGTGGGGGTTTCAGCGAGTTCCTTGAATCTGGT
TTTTGATCCCCCATTGGCAGAAATTCTAGCCATTCGGGATGGACTTCGTTTTGCTTTATCCTGTGCTTACCAAAAGATTCAGGTGGAATCAGATTGTGCACAAGCCATGA
ATGCAATCACAAGTGAAGATCCCCAACTGAGTTGTGCTGATTGTTGGCTGGAAGAAATTAGGGATTTATCTTGTAATTTCACTTCAGTCCAGTTTTTGTACGTAATCGAG
AATGTAATGGGGTGGCTGATAGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGATGCAGCTTGGAAGGAAGACCCACCTTCAACAGGTTGGAGTTCTATTGTACGAGATTGGAATGGAAATTTGTGTGGGGGTTTCAGCGAGTTCCTTGAATCTGGT
TTTTGATCCCCCATTGGCAGAAATTCTAGCCATTCGGGATGGACTTCGTTTTGCTTTATCCTGTGCTTACCAAAAGATTCAGGTGGAATCAGATTGTGCACAAGCCATGA
ATGCAATCACAAGTGAAGATCCCCAACTGAGTTGTGCTGATTGTTGGCTGGAAGAAATTAGGGATTTATCTTGTAATTTCACTTCAGTCCAGTTTTTGTACGTAATCGAG
AATGTAATGGGGTGGCTGATAGTGTAG
Protein sequenceShow/hide protein sequence
MLMQLGRKTHLQQVGVLLYEIGMEICVGVSASSLNLVFDPPLAEILAIRDGLRFALSCAYQKIQVESDCAQAMNAITSEDPQLSCADCWLEEIRDLSCNFTSVQFLYVIE
NVMGWLIV