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CaUC01G009070 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G009070
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRNase H domain-containing protein
Genome locationCiama_Chr01:10738121..10740534
RNA-Seq ExpressionCaUC01G009070
SyntenyCaUC01G009070
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7041153.1 unnamed protein product [Microthlaspi erraticum]4.5e-1632.09Show/hide
Query:  ERAQSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIV
        E A+SR   N   ++ +       W+RP  G +K N D AW  +    GLG ++R+ + +V+ I A+++        AE  A++  +R    F  +K++ 
Subjt:  ERAQSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIV

Query:  ESDCQLVINNLSERDFSADCW------FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFS-YPTWIVNHLSLDN
        ESD + +IN ++E    A+ W       NEIR L   F  V+F + +R  NG ADR+AK A S  I+A   +S  P W+ + + +DN
Subjt:  ESDCQLVINNLSERDFSADCW------FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFS-YPTWIVNHLSLDN

KAG2635063.1 hypothetical protein PVAP13_2NG311303 [Panicum virgatum]1.4e-1430.81Show/hide
Query:  AERAQSRRVSNSQAKEA--KKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKK
        A  A S  V     K A  K++++ + W++P+   +KLNVDA++     +   GAI+RDH  + +A++ R L    +AP+AE  A+ +GLRLA      +
Subjt:  AERAQSRRVSNSQAKEA--KKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKK

Query:  LIVESDCQLVINNLSERDFSAD---CWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLD
        +IV +DC  V++ + +  FSA      +++   L   F+ +S  +CNR +N  A  +A+N+   + +  W    P +I   L  D
Subjt:  LIVESDCQLVINNLSERDFSAD---CWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLD

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]2.1e-1836.57Show/hide
Query:  IKAERAQSRRVSNSQAKEAKKLEIT-KLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQK
        ++ +RA   R S  +    KK   + + W  P    +KLNVDAAW F P S+G  AI+RD+Q  +  +   S+++    PLAE   V +GLRL      K
Subjt:  IKAERAQSRRVSNSQAKEAKKLEIT-KLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQK

Query:  KLIVESDCQLVIN---NLSERDFSADCWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSY
        K+IV+SDC   I+    +   D S   W  EI ++S  F  ++F Y  R  N  AD +AK  R   IN  W  SY
Subjt:  KLIVESDCQLVIN---NLSERDFSADCWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSY

XP_042959454.1 uncharacterized protein LOC122294624 [Carya illinoinensis]2.5e-1434.38Show/hide
Query:  WQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADC---W
        W+ P +G LKLN D A   D    G+GAIL D    VL   ++   + ++    E LAV  G++L I+     L VESDC L++  L + D S       
Subjt:  WQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADC---W

Query:  FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDNC
        F+E++ L + F+SVSF +  R  N  A  +A+NA   +    W+ S P ++   L  D C
Subjt:  FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDNC

XP_042972859.1 uncharacterized protein LOC122304666 [Carya illinoinensis]3.2e-1431.93Show/hide
Query:  KKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERD-
        K++     W  P IG LKLNVD A   D  S G+G ILRDH  +V+  ++        A   E +A+  GL+L + +   K+I+ESD  +++N L+E   
Subjt:  KKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERD-

Query:  --FSADCWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLD
             D    +IR L  GF      + +R  NG A ++A+ A+       W+ S P+++   + LD
Subjt:  --FSADCWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLD

TrEMBL top hitse value%identityAlignment
A0A1R3G9C4 Reverse transcriptase5.9e-1437.31Show/hide
Query:  WQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQL---VINNLSERDFSADCW
        W  P++G+ KLNVDAA+  +    GLGA++RDH  +V + + + L+   +   AE  A+K GL+LA     ++ +VESDC +    IN+ S   +   C 
Subjt:  WQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQL---VINNLSERDFSADCW

Query:  FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNA
         +EIR+L+  F S+ F + NR +N  A  +AK A
Subjt:  FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNA

A0A446NU09 RNase H domain-containing protein1.0e-1329.38Show/hide
Query:  LWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSAD---C
        +W++P  G  K+NVDA++ ++  S   GA+ RD++ + +A ++  + +      AE  A++ G+ LA       + +ESDC   +N+L++ D        
Subjt:  LWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSAD---C

Query:  WFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDN
           E + L   FAS+SF +C R +N  AD +AKN  + + ++ W    P +I +HL +++
Subjt:  WFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDN

A0A5J9U9H2 RNase H domain-containing protein (Fragment)2.0e-1429.67Show/hide
Query:  QSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESD
        Q +  S+ + KE   +   K W +P  G  K+NVDAA+  D    G+G I+R+   E++  S R + +   A  AE LA KEGL L + +      +ESD
Subjt:  QSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESD

Query:  CQLVINNLSERDFSADCW---FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDNCP
        C +V N L   + +   +     E+++L      V  T+CNR  N  +  +A  A     +  W  S+P ++ + ++ D  P
Subjt:  CQLVINNLSERDFSADCW---FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDNCP

A0A6D2JVB2 Uncharacterized protein2.2e-1632.09Show/hide
Query:  ERAQSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIV
        E A+SR   N   ++ +       W+RP  G +K N D AW  +    GLG ++R+ + +V+ I A+++        AE  A++  +R    F  +K++ 
Subjt:  ERAQSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIV

Query:  ESDCQLVINNLSERDFSADCW------FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFS-YPTWIVNHLSLDN
        ESD + +IN ++E    A+ W       NEIR L   F  V+F + +R  NG ADR+AK A S  I+A   +S  P W+ + + +DN
Subjt:  ESDCQLVINNLSERDFSADCW------FNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFS-YPTWIVNHLSLDN

B8AI82 RNase H domain-containing protein3.5e-1436.43Show/hide
Query:  KLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAP-LAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDF
        K +I   W++P  G L +NVDAA+  D  S G G +LRDH    +  S   L    +AP +AE  A+++GL LA     K +IV++DC  V++ + +  F
Subjt:  KLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAP-LAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDF

Query:  SADC---WFNEIRDLSDGFASVSFTYCNRGSNGTADRIAK
        SA      F++ + + DGF ++S  +CNR SN  A  +A+
Subjt:  SADC---WFNEIRDLSDGFASVSFTYCNRGSNGTADRIAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0731.06Show/hide
Query:  RPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPL-AEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADCW--FN
        RP +  + +  DAAW  +    G G ++R+   E+ A+  +S       PL AE +A+   L+ A +    KL + SD Q +I  ++    S + +    
Subjt:  RPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPL-AEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADCW--FN

Query:  EIRDLSDGFASVSFTYCNRGSNGTADRIAKNA
        +I +LS GFA VSF++  R  N  AD +AK++
Subjt:  EIRDLSDGFASVSFTYCNRGSNGTADRIAKNA

AT5G38920.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.5e-0427.59Show/hide
Query:  RSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFS--ADCWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADW
        + L+    A + E  A++  +        +K+I ESD Q +++ L +       D    +I+ L   F    F + +RG NG ADRIAK + S +     
Subjt:  RSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFS--ADCWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADW

Query:  FFS-YPTWIVNHLSLD
         +S  P W+ + + LD
Subjt:  FFS-YPTWIVNHLSLD

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0727.04Show/hide
Query:  WQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFS--ADCWF
        W  P    LK N DA+       +GLG ILR+ Q  V+               AE   +   ++ +  F  KK+I E D Q +   ++ +  +     + 
Subjt:  WQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAEFLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFS--ADCWF

Query:  NEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADW--FFSYPTWIVNHLSLD
        + I+     F S+ F++ +R  NG AD +AK A   K N  W  F S P ++  +++ D
Subjt:  NEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADW--FFSYPTWIVNHLSLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCAAATCATGCCCTTGTCTCCTGTCAGAGAGCCTGTCTTCTTTGAGAGGGTCTTCCTTCCCATTTGCTTCCAAGGGAGAATCAAAGCGGAAAGAGCTCAATCTAG
AAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTT
TCGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTCGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAG
TTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTGCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGATAAACAACTTGAGTGAGCGTGATTT
TTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTCTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTA
AAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAACCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCT
mRNA sequenceShow/hide mRNA sequence
ATGTATCAAATCATGCCCTTGTCTCCTGTCAGAGAGCCTGTCTTCTTTGAGAGGGTCTTCCTTCCCATTTGCTTCCAAGGGAGAATCAAAGCGGAAAGAGCTCAATCTAG
AAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTT
TCGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTCGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAG
TTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTGCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGATAAACAACTTGAGTGAGCGTGATTT
TTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTCTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTA
AAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAACCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCT
Protein sequenceShow/hide protein sequence
MYQIMPLSPVREPVFFERVFLPICFQGRIKAERAQSRRVSNSQAKEAKKLEITKLWQRPSIGTLKLNVDAAWIFDPPSTGLGAILRDHQREVLAISARSLNSADEAPLAE
FLAVKEGLRLAIAFRQKKLIVESDCQLVINNLSERDFSADCWFNEIRDLSDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPTWIVNHLSLDNCP