| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_018829461.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] | 7.7e-89 | 74.07 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
M LSEEEIT+LFR+R+TV+QMLKDRGYFVGDFE+DM++EQFK K+GESMKREDLVINKS RNNSSD QI
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
Query: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
YIFFPEEPKVG+KT+ TY +RMKSENVFRAILVVQQNLTPFAR+SI EIS+K HLEVFQ EAEL++NIK HVL+PEHQ LTNEEKKTLLERYTVKE
Subjt: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| XP_022953770.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] | 6.5e-88 | 74.07 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
MVLSEEEIT+LFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ RN+SSD QI
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
Query: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Y+FFPEE KVG+KT+ TY RMK+ENVFRAILVVQQNLTPFART I EISSK HLEVFQ EAEL+VN+K+HVL+PEHQ LTNEEKKTLLERYTVKE
Subjt: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| XP_022959553.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] | 1.7e-88 | 74.9 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
MVL+EEEIT+LFRVRKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ RN+SSD QI
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
Query: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
YIFFPEEPKVG+KT+ TY RMKSENVFRAILVVQQNLTPFART I EIS+K HLEVFQ EAEL+VNIK+HVL+PEHQ L+NEEKKTLLERYTVKE
Subjt: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| XP_022991826.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] | 5.0e-88 | 74.07 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
MVLSEEEIT+LFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ RN+SSD QI
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
Query: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Y+FFPEE KVG+KT+ TY RMK+ENVFRAILVVQQNLTPFART I EISSK HLEVFQ EAEL+VN+K+HVL+PEHQ LTNEEKKTLLERYTVKE
Subjt: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| XP_038895255.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] | 1.0e-88 | 77.37 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
MVLSEEEITKLFRVRKTVLQMLKDRGYFVGD EL MSREQFK KFGESMKREDLVINKS RNNSS+ QI
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
Query: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
YIFFPEEPKVGIKT+ TY RMKSENV RA+LVVQQNLTPFART +GEISS+ HLEVFQ EAELMVNIK+HVLIPEHQ LTNEEKKTLLERYTVKE
Subjt: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRIQVTDPIARYYG+KRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2I4FCU5 DNA-directed RNA polymerases II and IV subunit 5A-like | 3.7e-89 | 74.07 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
M LSEEEIT+LFR+R+TV+QMLKDRGYFVGDFE+DM++EQFK K+GESMKREDLVINKS RNNSSD QI
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
Query: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
YIFFPEEPKVG+KT+ TY +RMKSENVFRAILVVQQNLTPFAR+SI EIS+K HLEVFQ EAEL++NIK HVL+PEHQ LTNEEKKTLLERYTVKE
Subjt: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| A0A6J1GQK9 DNA-directed RNA polymerases II and IV subunit 5A-like | 3.2e-88 | 74.07 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
MVLSEEEIT+LFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ RN+SSD QI
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
Query: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Y+FFPEE KVG+KT+ TY RMK+ENVFRAILVVQQNLTPFART I EISSK HLEVFQ EAEL+VN+K+HVL+PEHQ LTNEEKKTLLERYTVKE
Subjt: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| A0A6J1H699 DNA-directed RNA polymerases II and IV subunit 5A-like | 8.3e-89 | 74.9 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
MVL+EEEIT+LFRVRKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ RN+SSD QI
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
Query: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
YIFFPEEPKVG+KT+ TY RMKSENVFRAILVVQQNLTPFART I EIS+K HLEVFQ EAEL+VNIK+HVL+PEHQ L+NEEKKTLLERYTVKE
Subjt: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| A0A6J1JRV4 DNA-directed RNA polymerases II and IV subunit 5A-like | 2.4e-88 | 74.07 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
MVLSEEEIT+LFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ RN+SSD QI
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
Query: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Y+FFPEE KVG+KT+ TY RMK+ENVFRAILVVQQNLTPFART I EISSK HLEVFQ EAEL+VN+K+HVL+PEHQ LTNEEKKTLLERYTVKE
Subjt: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| A0A6J1KT45 DNA-directed RNA polymerases II and IV subunit 5A-like | 8.3e-89 | 74.9 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
MVL+EEEIT+LFRVRKTVLQMLKDRGYFVGDFE+DMSREQFK K+GESMKRED+VINK+ RN+SSD QI
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQI
Query: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
YIFFPEEPKVG+KT+ TY RMKSENVFRAILVVQQNLTPFART I EIS+K HLEVFQ EAEL+VNIK+HVL+PEHQ L+NEEKKTLLERYTVKE
Subjt: YIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRIQVTDP+ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 5.3e-48 | 46.37 | Show/hide |
Query: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGE-----SMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYD
M E E +L+R+RKTVLQM+ DRGY V ELD E FK+ FG+ R DL I + ++ +D
Subjt: MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGE-----SMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYD
Query: SFTQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLER
Q+++FFPE+ K+GIKT+ ++M+ +N+ RAI+VVQ +TP A+ SIG+++ K LE F EAELMVNI H L+PEH +T EEK LL R
Subjt: SFTQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLER
Query: YTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Y +K++QLPRIQ DP+ARY+GL+RGQVVKIIRPSETAGRY+TYR VV
Subjt: YTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| B0BNE2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 2.4e-48 | 44.44 | Show/hide |
Query: EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGES-----MKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQ
EEE +L+++RKT++Q+ DRGY V ELD + E+FK +FG+ +R DL + + ++ +D Q
Subjt: EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGES-----MKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQ
Query: IYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVK
+++FFPEEPKVGIKT+ Y +RM+ EN+ RA++VVQQ +TP A+ S+ +++ K LE F + EL++NI H L+PEH +T EE LL RY ++
Subjt: IYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVK
Query: ETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV
E+QLPRIQ DP+ARY+G+KRGQVVKIIRPSETAGRY+TYR V
Subjt: ETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 3.7e-78 | 64.88 | Show/hide |
Query: VLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIY
+L+EEE+ +L+R++KT++QML+DRGYF+ D EL M+++QF +K G++MKREDLV K+ RN++SD Q+Y
Subjt: VLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIY
Query: IFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKET
IFFP+E KVG+KT+ Y RMKSENVFRAILVVQQNLTPFART I EISSK HLEVFQ EAE++VNIK HVL+PEHQ LT EEKKTLLERYTVKET
Subjt: IFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKET
Query: QLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
QLPRIQVTDPIARY+GLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: QLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 6.9e-48 | 44.03 | Show/hide |
Query: EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGES-----MKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQ
EEE +L+++RKT++Q+ DRGY V ELD + E+F+ +FG+ +R DL + + ++ +D Q
Subjt: EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGES-----MKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQ
Query: IYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVK
+++FFPEEPKVGIKT+ Y +RM+ EN+ RA++VVQQ +TP A+ S+ +++ K LE F + EL++NI H L+PEH +T EE LL RY ++
Subjt: IYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVK
Query: ETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV
E QLPRIQ DP+ARY+G+KRGQVVKIIRPSETAGRY+TYR V
Subjt: ETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV
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| Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 2.4e-48 | 44.44 | Show/hide |
Query: EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGES-----MKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQ
EEE +L+++RKT++Q+ DRGY V ELD + E+FK +FG+ +R DL + + ++ +D Q
Subjt: EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGES-----MKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQ
Query: IYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVK
+++FFPEEPKVGIKT+ Y +RM+ EN+ RA++VVQQ +TP A+ S+ +++ K LE F + EL++NI H L+PEH +T EE LL RY ++
Subjt: IYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVK
Query: ETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV
E+QLPRIQ DP+ARY+G+KRGQVVKIIRPSETAGRY+TYR V
Subjt: ETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 5.4e-24 | 32.08 | Show/hide |
Query: SEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIF
S E K + R+T ++ML+DRGY V D ++++S +QF+ +GE V+L S +DS +I +
Subjt: SEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIF
Query: FPEEPKVGIKTLDTYKKRMKS-ENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQ
F V + + + S EN+ ILV+Q ++T A ++ S KV E+F++ +L+VN+ HVL P+HQ L ++EK++LL++++++E Q
Subjt: FPEEPKVGIKTLDTYKKRMKS-ENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQ
Query: LPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV
LPR+ DPI RYYGL+ GQV+K+ E + +VTYR V
Subjt: LPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 2.7e-79 | 64.88 | Show/hide |
Query: VLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIY
+L+EEE+ +L+R++KT++QML+DRGYF+ D EL M+++QF +K G++MKREDLV K+ RN++SD Q+Y
Subjt: VLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIY
Query: IFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKET
IFFP+E KVG+KT+ Y RMKSENVFRAILVVQQNLTPFART I EISSK HLEVFQ EAE++VNIK HVL+PEHQ LT EEKKTLLERYTVKET
Subjt: IFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKET
Query: QLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
QLPRIQVTDPIARY+GLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: QLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 3.4e-18 | 30.38 | Show/hide |
Query: EITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPE
E + + R T +ML+DRGY V + EL ++ +F+ FGE + E L I +R S ++K L +F+ + P S ++I
Subjt: EITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYIFFPE
Query: EPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRI
VG+ + ILV+Q + FA+ ++ V E F ++ +L+VNI H+ P+ + L EEK+ LL ++ +++ QLP +
Subjt: EPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRI
Query: QVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Q D RYYGLK+ QVVKI E G +VTYR ++
Subjt: QVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 1.0e-22 | 34.17 | Show/hide |
Query: LSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYI
LS EE + + R+ LQML+DRGY V D ++++S F+ +GE + L I+ R++S+ + K +F S + VN + D +Q
Subjt: LSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIYI
Query: FFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQ
E + ILV+Q ++T A +I S KV E+FQ+ +L+VNI H L P+HQ L +EEK TLL++++++E Q
Subjt: FFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQ
Query: LPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV
LPRI D I RYYGL++GQVVK+ E +V +R V
Subjt: LPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 1.0e-38 | 39.09 | Show/hide |
Query: EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESM---KREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIY
++EIT++F+VR+TVLQML+DRGY + + +L++ RE+F ++F ++M +E L ++ + N +D +IY
Subjt: EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESM---KREDLVINKSMRNNSSDQEKFLFESFSWMYRLFVNLFIYSPPFIYDSFTQIY
Query: IFFPEEPKVGIKTL-DTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
+F+PE PKVG+ + +M+ + V R I+VV +T AR ++ E++ + +EVF+ EAEL+ NI H L+ ++ L ++ KK LL YTV++
Subjt: IFFPEEPKVGIKTL-DTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQVKVKSEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKE
Query: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TQLPRI VTDP+ARYYGLKRGQVVKI R T+ Y TYR+ V
Subjt: TQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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