; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC01G010340 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G010340
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRNase H domain-containing protein
Genome locationCiama_Chr01:14951491..14953644
RNA-Seq ExpressionCaUC01G010340
SyntenyCaUC01G010340
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5470601.1 hypothetical protein F2P56_011105 [Juglans regia]8.0e-0824.52Show/hide
Query:  EPMEKLNITGWLDGYRKPRFWAFEKENDDLLSQVELVGNEY---GGWVVVSVMWRHSSVQ--RWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKV
        E +  L +  W   YR+ +F        +LL       N Y        VS+  R  +++  +W PP  G  KLNVD A      + G+G ++R + G+V
Subjt:  EPMEKLNITGWLDGYRKPRFWAFEKENDDLLSQVELVGNEY---GGWVVVSVMWRHSSVQ--RWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKV

Query:  VVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCV
        ++A +   +     E  E+  +  GL     +   ++ VES+  + +  L+  N  +S    +Y E   L + +    FS V R  N++ + LA  +   
Subjt:  VVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCV

Query:  KYSDLHEW
        K   +  W
Subjt:  KYSDLHEW

XP_006471930.1 uncharacterized protein LOC102617744 [Citrus sinensis]8.0e-0832.62Show/hide
Query:  RHSSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVA---QALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHST
        R  S QRW PP     KLNVD A +    ++GLG ++R   G+VV A   QA FR    +V   E   +  GL +A       L VE++ + V + +++T
Subjt:  RHSSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVA---QALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHST

Query:  NFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLA
            S    I  E       ++   F+ VPR CN   ++LA
Subjt:  NFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLA

XP_015380596.1 uncharacterized protein LOC107174324 [Citrus sinensis]6.1e-0828.75Show/hide
Query:  RHSSV--QRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTN
        +H  V  +RW PP  G FK NVD A  ++Q   GLG +IR+  GKVV A     +    V+  E      GL +A +  C+ + +ES+ + VV  +    
Subjt:  RHSSV--QRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTN

Query:  FPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQIVG
           +    +  E        K       PR CN + ++LA     ++ +D   W+  I G
Subjt:  FPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQIVG

XP_023873208.1 uncharacterized protein LOC111985788 [Quercus suber]3.6e-0826.32Show/hide
Query:  EKENDDLLSQVELVGN-------EYGGWVVVSVMWRHSSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEIST
        E+ N         +GN       EY   +  +V  + +  + W PP  G FKLNVD A   +Q   G+G +IR + GKV+ A +      L     E   
Subjt:  EKENDDLLSQVELVGN-------EYGGWVVVSVMWRHSSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEIST

Query:  LLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQ
        +  GL  A +L   +  +E +  +V+  L   + P S  A I   ++++   ++   FS V R  N   ++LA+ +  +   D   WL +
Subjt:  LLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQ

XP_030939647.1 uncharacterized protein LOC115964488 [Quercus lobata]2.1e-0829.75Show/hide
Query:  RHSSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQA---LFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHST
        R S   +W PP +G +K+NVD A      ++G+G +IR+D G+V+ A +      LG L  EA  + T    +  A N+   D   E +   +   LH  
Subjt:  RHSSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQA---LFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHST

Query:  NFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQ
        + PS+    I    L    S++   FS + R  N+  + LA  +C V   D   WL +
Subjt:  NFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQ

TrEMBL top hitse value%identityAlignment
A0A7J6EAV9 RNase H domain-containing protein3.9e-0831.45Show/hide
Query:  VQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPY
        +Q+W PP      +N D +   +    GL  +IR   G ++VA+ LF LG ++V   E++ +  G+ LAHN     + V S+   V+  L+ST+  SS +
Subjt:  VQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPY

Query:  AEIYVEALALGSSWKLRTFSLVPR
          +  E L L   +    FS +PR
Subjt:  AEIYVEALALGSSWKLRTFSLVPR

A0A7J6HHY1 RNase H domain-containing protein6.6e-0826.03Show/hide
Query:  SSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS
        S+   W PP +    +N D +    Q   GL  +IR D G ++VA+ +F  GCL+V+  E + +  GL LA        WV S+ ++++  + + +   +
Subjt:  SSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS

Query:  PYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSD
         + ++      + S ++L  F    R CN +  +LA +S   + S+
Subjt:  PYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSD

A0A7J6I0M5 RNase H domain-containing protein6.6e-0826.03Show/hide
Query:  SSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS
        S+   W PP +    +N D +    Q   GL  +IR D G ++VA+ +F  GCL+V+  E + +  GL LA        WV S+ ++++  + + +   +
Subjt:  SSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS

Query:  PYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSD
         + ++      + S ++L  F    R CN +  +LA +S   + S+
Subjt:  PYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSD

A0A803P8L6 Uncharacterized protein2.3e-0829.53Show/hide
Query:  WFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEI
        W PP  G F +N D +  + Q   GLG +IR   G VVVA+ +F  GCL+V   E   + +GL LA      ++ + S+ + V   L+  N   + +  +
Subjt:  WFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEI

Query:  YVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQI
          + +    ++ L +F   PR CN +   LA  +   K S++  W S +
Subjt:  YVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKYSDLHEWLSQI

A0A803PF28 Uncharacterized protein8.6e-0827.74Show/hide
Query:  VQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPY
        V +W PP      +N D +  + QS   L  +IR   G +VVA+A F  GC  V   E + +L GL LA         + S+   +++ +H  +   S +
Subjt:  VQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPY

Query:  AEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQS
         ++    + +  +++   F  VPR CN +  +LA  S
Subjt:  AEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGGATGGTTGGAGGATCTAAAGATCTAGAATTTGAGCCTATGGAGAAATTGAATATCACGGGATGGTTAGATGGTTACCGAAAACCTAGATTCTGGGCC
TTTGAGAAAGAGAATGACGATCTGCTGAGCCAAGTAGAGCTAGTAGGGAATGAGTACGGAGGGTGGGTGGTCGTCTCGGTCATGTGGCGTCATAGTTCAGTGCAG
AGGTGGTTCCCGCCAGTGAGGGGTGGCTTCAAGTTAAACGTTGACGTGGCTTGTCATCTGAATCAGTCGGAGATTGGGCTGGGCGATATGATTAGACATGATGGT
GGAAAGGTGGTTGTGGCCCAAGCTCTATTCCGTTTGGGTTGTTTGAATGTTGAGGCAGGGGAGATTTCGACTTTGTTGGCTGGTTTGCTGCTGGCTCATAACTTA
GTGTGTGTGGATCTGTGGGTTGAATCTAATATAGAGATTGTGGTGAAGAACCTCCATTCAACTAACTTTCCTTCTTCTCCTTATGCTGAAATCTATGTTGAAGCT
TTAGCTTTGGGTTCTAGTTGGAAATTAAGGACCTTTAGTTTGGTTCCTAGAGGTTGTAATATAATGGTCTATAATCTAGCCCATCAATCATGCTGTGTCAAGTAT
TCTGACCTTCATGAGTGGCTTTCCCAAATTGTAGGACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACAGGATGGTTGGAGGATCTAAAGATCTAGAATTTGAGCCTATGGAGAAATTGAATATCACGGGATGGTTAGATGGTTACCGAAAACCTAGATTCTGGGCC
TTTGAGAAAGAGAATGACGATCTGCTGAGCCAAGTAGAGCTAGTAGGGAATGAGTACGGAGGGTGGGTGGTCGTCTCGGTCATGTGGCGTCATAGTTCAGTGCAG
AGGTGGTTCCCGCCAGTGAGGGGTGGCTTCAAGTTAAACGTTGACGTGGCTTGTCATCTGAATCAGTCGGAGATTGGGCTGGGCGATATGATTAGACATGATGGT
GGAAAGGTGGTTGTGGCCCAAGCTCTATTCCGTTTGGGTTGTTTGAATGTTGAGGCAGGGGAGATTTCGACTTTGTTGGCTGGTTTGCTGCTGGCTCATAACTTA
GTGTGTGTGGATCTGTGGGTTGAATCTAATATAGAGATTGTGGTGAAGAACCTCCATTCAACTAACTTTCCTTCTTCTCCTTATGCTGAAATCTATGTTGAAGCT
TTAGCTTTGGGTTCTAGTTGGAAATTAAGGACCTTTAGTTTGGTTCCTAGAGGTTGTAATATAATGGTCTATAATCTAGCCCATCAATCATGCTGTGTCAAGTAT
TCTGACCTTCATGAGTGGCTTTCCCAAATTGTAGGACTTTAA
Protein sequenceShow/hide protein sequence
MHRMVGGSKDLEFEPMEKLNITGWLDGYRKPRFWAFEKENDDLLSQVELVGNEYGGWVVVSVMWRHSSVQRWFPPVRGGFKLNVDVACHLNQSEIGLGDMIRHDG
GKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSLVPRGCNIMVYNLAHQSCCVKY
SDLHEWLSQIVGL