; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC01G010770 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G010770
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionSWIM-type domain-containing protein
Genome locationCiama_Chr01:16538199..16540041
RNA-Seq ExpressionCaUC01G010770
SyntenyCaUC01G010770
Gene Ontology termsGO:0006313 - transposition, DNA-mediated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0004803 - transposase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047595.1 uncharacterized protein E6C27_scaffold115G00630 [Cucumis melo var. makuwa]7.7e-2471.05Show/hide
Query:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
        F++++LS YAEDMIR +L  +RSMN+ P++QHE EVH C  QFVVNILNRTCS R+WDLD+IPCSHACIALS+RNL
Subjt:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
TYK09853.1 uncharacterized protein E5676_scaffold39G00210 [Cucumis melo var. makuwa]1.9e-2269.74Show/hide
Query:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
        F++++LS YAEDMIR +L  +RSMN+ P++QHE EVH    QFVVNILNRTCS R+WDLD+IPCSHACIALS+RNL
Subjt:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
XP_008448115.1 PREDICTED: uncharacterized protein LOC103490404 [Cucumis melo]3.2e-2268.42Show/hide
Query:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
        F+ ++LS YAEDMIR +L  +RSMN+ P++QHE EVH    QFV+NILNRTCS R+WDLD+IPCSHACIALS+RNL
Subjt:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
XP_008450195.1 PREDICTED: uncharacterized protein LOC103491855 [Cucumis melo]1.9e-2271.05Show/hide
Query:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
        F+ +KLS YAEDMIR +LR++RSMN+ P++QHE EVH    QFVVNILNRTCS  +WDLD+IPCSHACIALS+RNL
Subjt:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
XP_016901440.1 PREDICTED: uncharacterized protein LOC107991253 [Cucumis melo]6.5e-2371.05Show/hide
Query:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
        F+ ++LS YAEDMIR +LR +RSMN+ P++QHE EVH    QFVVNILNRTCS R+WDLD+IPCSHACIALS+RNL
Subjt:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
TrEMBL top hitse value%identityAlignment
A0A1S3BPC4 uncharacterized protein LOC1034918559.1e-2371.05Show/hide
Query:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
        F+ +KLS YAEDMIR +LR++RSMN+ P++QHE EVH    QFVVNILNRTCS  +WDLD+IPCSHACIALS+RNL
Subjt:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
A0A1S4E0D5 uncharacterized protein LOC1079912533.1e-2371.05Show/hide
Query:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
        F+ ++LS YAEDMIR +LR +RSMN+ P++QHE EVH    QFVVNILNRTCS R+WDLD+IPCSHACIALS+RNL
Subjt:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
A0A5A7U1T3 Uncharacterized protein3.7e-2471.05Show/hide
Query:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
        F++++LS YAEDMIR +L  +RSMN+ P++QHE EVH C  QFVVNILNRTCS R+WDLD+IPCSHACIALS+RNL
Subjt:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
A0A5D3CDB8 Uncharacterized protein9.1e-2369.74Show/hide
Query:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
        F++++LS YAEDMIR +L  +RSMN+ P++QHE EVH    QFVVNILNRTCS R+WDLD+IPCSHACIALS+RNL
Subjt:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
A0A5D3E198 MuDRA-like transposase1.6e-2269.74Show/hide
Query:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
        F+ ++LS YAEDMIR +L  +RSMN+ P++QHE EVH    QFVVNILNRTCS R+WDLD+IPCSHACIALS+RNL
Subjt:  FEHSKLSTYAEDMIRTTLRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGTTTTATTAAACTTCCTCGGGAATGATTTCTGTGTGGTAGTTGACCACGTATCTTCAGGTACTTCTGGAAATACAATGTATTTTAATAAGGAGTTAGCG
GTAATAAATGATTCTCCCCAGCAGTCTGATGGCAATATTGAAATATTTGATTTCAAGATTTTGAATCATCTCAATCTCTATATGAGAAGGCACTATGGTGTAAAT
GTAAGTTATGAGAAGGTTTGGAGAGGCCATGAGATTGCTCTCAATTCTAAAGGTTTTGAGCATTCCAAACTTTCCACATATGCGGAGGACATGATTCGCACAACA
TTAAGGGACAATAGATCAATGAATGTATGCCCTATTAACCAGCACGAATCTGAAGTTCATGACTGCACAAACCAATTTGTTGTCAACATTCTGAATCGTACTTGT
TCATATCGACGTTGGGACCTAGACATGATCCCGTGCTCGCATGCATGCATTGCTTTGTCTAGTAGGAACCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGTTTTATTAAACTTCCTCGGGAATGATTTCTGTGTGGTAGTTGACCACGTATCTTCAGGTACTTCTGGAAATACAATGTATTTTAATAAGGAGTTAGCG
GTAATAAATGATTCTCCCCAGCAGTCTGATGGCAATATTGAAATATTTGATTTCAAGATTTTGAATCATCTCAATCTCTATATGAGAAGGCACTATGGTGTAAAT
GTAAGTTATGAGAAGGTTTGGAGAGGCCATGAGATTGCTCTCAATTCTAAAGGTTTTGAGCATTCCAAACTTTCCACATATGCGGAGGACATGATTCGCACAACA
TTAAGGGACAATAGATCAATGAATGTATGCCCTATTAACCAGCACGAATCTGAAGTTCATGACTGCACAAACCAATTTGTTGTCAACATTCTGAATCGTACTTGT
TCATATCGACGTTGGGACCTAGACATGATCCCGTGCTCGCATGCATGCATTGCTTTGTCTAGTAGGAACCTGTAG
Protein sequenceShow/hide protein sequence
MLVLLNFLGNDFCVVVDHVSSGTSGNTMYFNKELAVINDSPQQSDGNIEIFDFKILNHLNLYMRRHYGVNVSYEKVWRGHEIALNSKGFEHSKLSTYAEDMIRTT
LRDNRSMNVCPINQHESEVHDCTNQFVVNILNRTCSYRRWDLDMIPCSHACIALSSRNL