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CaUC01G011180 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G011180
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPentatricopeptide repeat (PPR) superfamily protein
Genome locationCiama_Chr01:18001307..18001540
RNA-Seq ExpressionCaUC01G011180
SyntenyCaUC01G011180
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3947706.1 hypothetical protein CMV_026192 [Castanea mollissima]4.6e-1965.43Show/hide
Query:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        MT RDLVSW+TMM           A++LFDEM++SGI PD+IV+MAV SACSHA LVD+ LRYF+SMVGDYN  P+QEIYG
Subjt:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

XP_022157012.1 putative pentatricopeptide repeat-containing protein At1g56570 [Momordica charantia]1.6e-1970.37Show/hide
Query:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        MTQRDLVSW+TMM           A+KLFDEMV+S I PDRIVFMAV SACSHA LVDK L YFRSM+ DY  NPDQEIYG
Subjt:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

XP_023891648.1 putative pentatricopeptide repeat-containing protein At1g56570 [Quercus suber]3.5e-1965.43Show/hide
Query:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        MT RDLVSW+TMM           A++LFD+M++SGI PD+IV+MAV SACSHA LVD+ LRYF+SMVGDYN  PDQEIYG
Subjt:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

XP_030957260.1 putative pentatricopeptide repeat-containing protein At1g56570 isoform X1 [Quercus lobata]3.5e-1965.43Show/hide
Query:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        MT RDLVSW+TMM           A++LFDEM++SGI PD+IV+MAV SACSHA LVD+ LRYF+SMVGDYN +P+QEIYG
Subjt:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

XP_030957261.1 putative pentatricopeptide repeat-containing protein At1g56570 isoform X2 [Quercus lobata]3.5e-1965.43Show/hide
Query:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        MT RDLVSW+TMM           A++LFDEM++SGI PD+IV+MAV SACSHA LVD+ LRYF+SMVGDYN +P+QEIYG
Subjt:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

TrEMBL top hitse value%identityAlignment
A0A6J1DTG1 putative pentatricopeptide repeat-containing protein At1g565707.6e-2070.37Show/hide
Query:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        MTQRDLVSW+TMM           A+KLFDEMV+S I PDRIVFMAV SACSHA LVDK L YFRSM+ DY  NPDQEIYG
Subjt:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

A0A6J1EZ33 putative pentatricopeptide repeat-containing protein At1g565702.9e-1967.9Show/hide
Query:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        M +RDLVSW+TMM            +KLFDEMV+SGI PDRIVFMAV SACSHA LV+K L YFRSMV DYN NPD EIYG
Subjt:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

A0A6J1JJV4 putative pentatricopeptide repeat-containing protein At1g565702.2e-1967.9Show/hide
Query:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        M QRDLVSW+TMM            +KLFDEMV+SGI PDRIVFMAV SACSHA LV+K L YFRSM+ DYN NPD EIYG
Subjt:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

A0A7N2L620 Uncharacterized protein1.7e-1965.43Show/hide
Query:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        MT RDLVSW+TMM           A++LFDEM++SGI PD+IV+MAV SACSHA LVD+ LRYF+SMVGDYN +P+QEIYG
Subjt:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

A0A7N2L6F2 Uncharacterized protein2.2e-1965.43Show/hide
Query:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        MT RDLVSW+TMM           A++LFDEM++SGI PD+IV+MAV SACSHA LVD+ LRYF+SMVGDYN  P+QEIYG
Subjt:  MTQRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

SwissProt top hitse value%identityAlignment
Q5XEY7 Pentatricopeptide repeat-containing protein At4g141701.5e-0940Show/hide
Query:  MTQRDLVSWSTM-----------MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY
        M++RD++SWS++           M+ KLFDEM++ GI P+ + F+ V SAC+H  LV+K   YFR ++ +YN  P+ + Y
Subjt:  MTQRDLVSWSTM-----------MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY

Q9CAY1 Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial5.8e-0941.25Show/hide
Query:  MTQRDLVSWSTM-----------MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY
        M  + LVSW+ M           + + LFD+M++ GI PD  VF+ V SACSH+ L DK L  FR+M  +Y   P  E Y
Subjt:  MTQRDLVSWSTM-----------MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY

Q9FXA9 Putative pentatricopeptide repeat-containing protein At1g565706.4e-1655.13Show/hide
Query:  QRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY
        +R+LVSW++MM           A++LFD+MV SGI PDRIVFMAV SAC HA LV+K L+YF  M  +Y  NPD++IY
Subjt:  QRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY

Q9LS72 Pentatricopeptide repeat-containing protein At3g292302.6e-0940.51Show/hide
Query:  QRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        ++DLVSW+TM+           A++LF  M + GI PD++ F+AV  +C+HA L+D+ + YF SM   Y+  P  E YG
Subjt:  QRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

Q9STE1 Pentatricopeptide repeat-containing protein At4g213003.4e-0940.74Show/hide
Query:  MTQRDLVSWSTMMA-----------MKLFDEMVQ-SGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY
        M ++++VSW++++A           + LF EMV+ SGI PD+I F+ + S+C H   VD+ +R+FRSM  DY   P QE Y
Subjt:  MTQRDLVSWSTMMA-----------MKLFDEMVQ-SGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY

Arabidopsis top hitse value%identityAlignment
AT1G13410.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.4e-1041.98Show/hide
Query:  QRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYGGC
        +RDL+SW+TM+           A+ LF EM  SGI PD++ F+ V  AC H  LV+  L YF SM  D++  P+ E + GC
Subjt:  QRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYGGC

AT1G56570.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.5e-1755.13Show/hide
Query:  QRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY
        +R+LVSW++MM           A++LFD+MV SGI PDRIVFMAV SAC HA LV+K L+YF  M  +Y  NPD++IY
Subjt:  QRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY

AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.8e-1040.51Show/hide
Query:  QRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG
        ++DLVSW+TM+           A++LF  M + GI PD++ F+AV  +C+HA L+D+ + YF SM   Y+  P  E YG
Subjt:  QRDLVSWSTMM-----------AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYG

AT4G14170.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-1040Show/hide
Query:  MTQRDLVSWSTM-----------MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY
        M++RD++SWS++           M+ KLFDEM++ GI P+ + F+ V SAC+H  LV+K   YFR ++ +YN  P+ + Y
Subjt:  MTQRDLVSWSTM-----------MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY

AT4G21300.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.4e-1040.74Show/hide
Query:  MTQRDLVSWSTMMA-----------MKLFDEMVQ-SGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY
        M ++++VSW++++A           + LF EMV+ SGI PD+I F+ + S+C H   VD+ +R+FRSM  DY   P QE Y
Subjt:  MTQRDLVSWSTMMA-----------MKLFDEMVQ-SGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCAAAGAGATTTGGTGTCTTGGAGTACCATGATGGCCATGAAGTTGTTCGATGAAATGGTTCAAAGTGGAATTCTACCTGATCGGATAGTGTTCATGGCAGTCCC
AAGTGCTTGCAGCCATGCTGATCTTGTTGACAAGGAACTAAGATATTTTAGATCAATGGTGGGGGATTACAATCCAAACCCAGATCAAGAAATCTATGGGGGCTGTGGTG
GACTTTCTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTCAAAGAGATTTGGTGTCTTGGAGTACCATGATGGCCATGAAGTTGTTCGATGAAATGGTTCAAAGTGGAATTCTACCTGATCGGATAGTGTTCATGGCAGTCCC
AAGTGCTTGCAGCCATGCTGATCTTGTTGACAAGGAACTAAGATATTTTAGATCAATGGTGGGGGATTACAATCCAAACCCAGATCAAGAAATCTATGGGGGCTGTGGTG
GACTTTCTTGGTGA
Protein sequenceShow/hide protein sequence
MTQRDLVSWSTMMAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEIYGGCGGLSW