| GenBank top hits | e value | %identity | Alignment |
|---|
| AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria] | 7.1e-160 | 42.7 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FIDHGLT+ELSKFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEK +IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNL+IPENNT LLPRDILAAA HLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLENMVRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPE++ VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGIVSK LP+EDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTGNPFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
|
|
| KAF2282413.1 hypothetical protein GH714_043902 [Hevea brasiliensis] | 1.3e-166 | 52.31 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FID GLT+EL KF KIEDTDQEIEFQLFV +VEP +KERD AVYES+ YSS+LYVSA LI KT RDMQEQTIFIGNIPLMNS GT I
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SE DHN IS+YT TIIS+WGGR+ELEIDRKARIWARVSRKQKISILVLSSAMG NLREILENVCYPEI LSFLNDKEK +IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQF+ RDP RLNL+IP NNT LLPRDIL AA HLI +KFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------KKRSLSY-----------------------------
F LAL+RLEN+VRGTICGAIRHKLIPTPQNL R LSY
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------KKRSLSY-----------------------------
Query: ------------------------------------NPEIVCVYIS------------------------------------------------------
+ ++ Y+S
Subjt: ------------------------------------NPEIVCVYIS------------------------------------------------------
Query: -----------------------------------------------------------QKHDIKVGDKIARRHGNKGIVSKNLPKEDMPYLQNGRPVDM
QK +IKVGDK+A RHGNKGI+SK LP++DMPYLQ+G+P+DM
Subjt: -----------------------------------------------------------QKHDIKVGDKIARRHGNKGIVSKNLPKEDMPYLQNGRPVDM
Query: VFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPDLV
VFNPLGVPSRMNVGQIFECSLGL G LLDRHYRI PFDERYEQEASRKLVFSELYEASKQTA+PWVFEPEYPGKSRIFDGRTG+PFEQP ++
Subjt: VFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPDLV
|
|
| YP_009325981.1 RNA polymerase beta subunit [Citrullus lanatus] | 1.4e-160 | 42.81 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FIDHGLT+ELSKFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEKN+IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNL+IPENNT LLPRDILAAA HLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLENMVRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPE++ VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGIVSK LP+EDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTGNPFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
|
|
| YP_009420786.1 RNA polymerase beta subunit [Citrullus colocynthis] | 1.4e-160 | 42.81 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FIDHGLT+ELSKFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEKN+IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNL+IPENNT LLPRDILAAA HLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLENMVRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPE++ VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGIVSK LP+EDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTGNPFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
|
|
| YP_009738193.1 RNA polymerase beta subunit [Siraitia siamensis] | 7.1e-160 | 42.7 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FIDHGLT+ELSKFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEK +IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNL+IPENNT LLPRDILAAA HLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLENMVRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPE++ VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGIVSK LP+EDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTGNPFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1P8LD96 DNA-directed RNA polymerase subunit beta | 6.9e-161 | 42.81 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FIDHGLT+ELSKFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEKN+IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNL+IPENNT LLPRDILAAA HLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLENMVRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPE++ VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGIVSK LP+EDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTGNPFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
|
|
| A0A1P8LDX8 DNA-directed RNA polymerase subunit beta | 6.9e-161 | 42.81 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FIDHGLT+ELSKFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEKN+IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNL+IPENNT LLPRDILAAA HLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLENMVRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPE++ VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGIVSK LP+EDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTGNPFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
|
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| A0A1P8LF53 DNA-directed RNA polymerase subunit beta | 6.9e-161 | 42.81 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FIDHGLT+ELSKFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEKN+IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNL+IPENNT LLPRDILAAA HLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLENMVRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPE++ VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGIVSK LP+EDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTGNPFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
|
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| A0A343A8A2 DNA-directed RNA polymerase subunit beta | 6.9e-161 | 42.81 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FIDHGLT+ELSKFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEKN+IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNL+IPENNT LLPRDILAAA HLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLENMVRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPE++ VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGIVSK LP+EDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTGNPFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
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| A0A6A6K273 DNA-directed RNA polymerase | 6.5e-167 | 52.31 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FID GLT+EL KF KIEDTDQEIEFQLFV +VEP +KERD AVYES+ YSS+LYVSA LI KT RDMQEQTIFIGNIPLMNS GT I
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SE DHN IS+YT TIIS+WGGR+ELEIDRKARIWARVSRKQKISILVLSSAMG NLREILENVCYPEI LSFLNDKEK +IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQF+ RDP RLNL+IP NNT LLPRDIL AA HLI +KFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------KKRSLSY-----------------------------
F LAL+RLEN+VRGTICGAIRHKLIPTPQNL R LSY
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------KKRSLSY-----------------------------
Query: ------------------------------------NPEIVCVYIS------------------------------------------------------
+ ++ Y+S
Subjt: ------------------------------------NPEIVCVYIS------------------------------------------------------
Query: -----------------------------------------------------------QKHDIKVGDKIARRHGNKGIVSKNLPKEDMPYLQNGRPVDM
QK +IKVGDK+A RHGNKGI+SK LP++DMPYLQ+G+P+DM
Subjt: -----------------------------------------------------------QKHDIKVGDKIARRHGNKGIVSKNLPKEDMPYLQNGRPVDM
Query: VFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPDLV
VFNPLGVPSRMNVGQIFECSLGL G LLDRHYRI PFDERYEQEASRKLVFSELYEASKQTA+PWVFEPEYPGKSRIFDGRTG+PFEQP ++
Subjt: VFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPDLV
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| Q0ZJ28 DNA-directed RNA polymerase subunit beta | 3.5e-154 | 40.63 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FID GLT+EL KFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TI+S+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEK +IGSKE+AIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQF+ DP RLNL+IP+NNT LLP+DILAAA HLIG+KFGMG LDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LAL+RLEN+VRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPE + VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGI+SK LP++DMPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LLDRHYRI PFDE+YEQEASRKLVFSELYEASKQTA+PWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTG+PFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
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| Q2L8Z9 DNA-directed RNA polymerase subunit beta | 1.0e-153 | 40.74 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
F+D GLT+EL KFPKIEDT+QEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT +DMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFL DKEK +IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNLNIP+NNT LLPRDILAAA LIG+KFGMG LDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLEN+VRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPE + VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGI+SK LP++DMPYLQ+GRPVDMVFNPLGVPSRMNVGQ+FECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELY+ASKQTA+PWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTG PFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
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| Q49L06 DNA-directed RNA polymerase subunit beta | 1.4e-155 | 40.76 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FID GLT+EL KFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQT+FIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEK +IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQF+ DP RLNL+IP+NNT LLPRDILAAA HLIG+KFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLEN+V+GTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIAR
KK +YNPE +CVYI QK +IKVGDK+A
Subjt: ----------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIAR
Query: RHGNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYP
RHGNKGI+SK LP++DMPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LLDRHYRI PFDERYEQEASRKLVFSELYEAS+QTA+PWVFEPEYP
Subjt: RHGNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYP
Query: GKSRIFDGRTGNPFEQPDLV
GKSRIFDGRTG+PFEQP ++
Subjt: GKSRIFDGRTGNPFEQPDLV
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| Q4VZP1 DNA-directed RNA polymerase subunit beta | 3.5e-162 | 42.7 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FIDHGLT+ELSKFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEI LSFLNDKEK +IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNL+IPENNT LL RDILAAA HLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLENMVRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
KK SYNPEI+ VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGIVSK LP+EDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTGNPFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
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| Q8S8X9 DNA-directed RNA polymerase subunit beta | 1.8e-153 | 40.85 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FID GLT+EL KFPKIEDTDQEIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI K RDMQEQTIFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGR ELEIDRKARIWARVSRKQKISILVLSSAMG NLREILENVCYPEI LSFL+DKE+ +IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQF+ S DP RLNL+IP+NNT LLPRDILAAA HLIGLKFGMG LDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
F LALVRLEN+VRGTICGAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
K+ SYNPE + VYISQK +IKVGDK+A RH
Subjt: --------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIARRH
Query: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
GNKGI+SK LP++DMPYLQ+GR VDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELYEASKQTA+PWVFEPEYPGK
Subjt: GNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGK
Query: SRIFDGRTGNPFEQPDLV
SRIFDGRTGNPFEQP ++
Subjt: SRIFDGRTGNPFEQPDLV
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT3G23780.1 nuclear RNA polymerase D2A | 3.3e-06 | 25.86 | Show/hide |
Query: LKKRSLSYNPE---IVCVYISQKHDIKVGDKIARRHGNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSL-------------GLAG
++K LS N E V + Q +GDK + HG KG++ +++ P+ G D+V NP PSR GQ+ E +L A
Subjt: LKKRSLSYNPE---IVCVYISQKHDIKVGDKIARRHGNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSL-------------GLAG
Query: SLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPDLVLLIFYKR
+ L RH PF E + +L + S W G R+++GR+G + FY+R
Subjt: SLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPDLVLLIFYKR
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| AT4G21710.1 DNA-directed RNA polymerase family protein | 3.1e-12 | 28.89 | Show/hide |
Query: KVGDKIARRHGNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASP
++GDK + RHG KG V +EDMP+ G D++ NP +PSRM +GQ+ EC +G + + + PF + S+ L++ Q
Subjt: KVGDKIARRHGNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASP
Query: WVFEPEYPGKSRIFDGRTGNPFEQPDLVLLIFYKR
G R+++G TG P + +Y+R
Subjt: WVFEPEYPGKSRIFDGRTGNPFEQPDLVLLIFYKR
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| AT5G45140.1 nuclear RNA polymerase C2 | 1.7e-10 | 28.67 | Show/hide |
Query: KVGDKIARRHGNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASP
++GDK + RHG KG+ + +ED P+ + G D++ NP G PSRM VG++ E AG R + F ER + + + L E
Subjt: KVGDKIARRHGNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASP
Query: WVFEPEYPGKSRIFDGRTGNPFEQPDLVLLIFYKRCLLRNLII
Y GK ++ G +G P E + I+Y++ L+++++
Subjt: WVFEPEYPGKSRIFDGRTGNPFEQPDLVLLIFYKRCLLRNLII
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| ATCG00180.1 DNA-directed RNA polymerase family protein | 4.2e-09 | 63.83 | Show/hide |
Query: ITKP------INLKKKDG--CERILGPIKSGICACGNYRVIGDKKKN
+TKP N +KDG CERI GPIKSGICACGNYRVIGD+K++
Subjt: ITKP------INLKKKDG--CERILGPIKSGICACGNYRVIGDKKKN
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| ATCG00190.1 RNA polymerase subunit beta | 2.2e-151 | 40.11 | Show/hide |
Query: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
FID GL +EL+KFPKIED D EIEFQLFV +VEP +KERD AVYESL YSS+LYVSAGLI KT R+MQEQ IFIGNIPLMNS GTSI
Subjt: FIDHGLTKELSKFPKIEDTDQEIEFQLFV----VVEPFLKERDEAVYESLIYSSKLYVSAGLIRKTHRDMQEQTIFIGNIPLMNSPGTSI------NCDQ
Query: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
LQSP IYY SELDHN IS+YT TIIS+WGGRLELEID+KARIWARVSRKQKISILVLSSAMG NLREILENVCYPEI LSFL DKEK +IGSKENAIL
Subjt: SNLQSPDIYYWSELDHNEISIYTSTIISNWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEICLSFLNDKEKNQIGSKENAIL
Query: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
EFYQQFS DP RLNLNIP+NN LLPRD+LAAA HLIG+KFGMGTLDDMNHLKNKRIRSVADLLQDQ
Subjt: EFYQQFSYASRDP-------------------------------RLNLNIPENNTILLPRDILAAATHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQ
Query: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
LAL RLEN+V+GTI GAIRHKLIPTPQNL
Subjt: FFLALVRLENMVRGTICGAIRHKLIPTPQNL---------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIAR
KK SYNPEI+ VYISQK +IKVGDK+A
Subjt: ----------------------------------------------------------------------KKRSLSYNPEIVCVYISQKHDIKVGDKIAR
Query: RHGNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYP
RHGNKGI+SK LP++DMPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELYEASKQTA+PWVFEPEYP
Subjt: RHGNKGIVSKNLPKEDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYP
Query: GKSRIFDGRTGNPFEQPDLV
GKSRIFDGRTG+PFEQP ++
Subjt: GKSRIFDGRTGNPFEQPDLV
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