CuGenDBv2

Gene ID	CaUC01G011360
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Mediator of RNA polymerase II transcription subunit 11
Genome location	Ciama_Chr01:18555577..18558334
RNA-Seq Expression	CaUC01G011360
Synteny	CaUC01G011360
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019404 - Mediator complex, subunit Med11

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]

6.9e-59

96.61

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEYQVKMEDS
        LDGM+QTID+YQVKMEDS
Subjt:  LDGMEQTIDEYQVKMEDS

XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]

7.6e-58

95.76

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEYQVKMEDS
        LDGM+QTIDEYQVK+ED+
Subjt:  LDGMEQTIDEYQVKMEDS

XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]

1.2e-58

97.46

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEYQVKMEDS
        LDGM+QTIDEYQVKMEDS
Subjt:  LDGMEQTIDEYQVKMEDS

XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]

2.6e-58

96.61

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEYQVKMEDS
        LDGM+QTIDEYQVKMED+
Subjt:  LDGMEQTIDEYQVKMEDS

XP_038894867.1 mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida]

5.8e-58

96.61

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MD PTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEYQVKMEDS
        LD M+QTIDEYQVKMEDS
Subjt:  LDGMEQTIDEYQVKMEDS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L450 Mediator of RNA polymerase II transcription subunit 11

3.2e-54

79.29

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK
        MDPP  NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK                      DIQVTLRDEIKSACEYRPFEK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK

Query:  CDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS
        CDYSSRITNELCCKKLEY++SKLDGM+QTID+YQVK+EDS
Subjt:  CDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS

A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 11

3.3e-59

96.61

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEYQVKMEDS
        LDGM+QTID+YQVKMEDS
Subjt:  LDGMEQTIDEYQVKMEDS

A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 11

3.7e-58

95.76

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEYQVKMEDS
        LDGM+QTIDEYQVK+ED+
Subjt:  LDGMEQTIDEYQVKMEDS

A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 11

5.7e-59

97.46

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISK
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEYQVKMEDS
        LDGM+QTIDEYQVKMEDS
Subjt:  LDGMEQTIDEYQVKMEDS

A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 11

3.1e-57

94.92

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Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEY+I K
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEYQVKMEDS
        LDGM+QTIDEYQVKMED+
Subjt:  LDGMEQTIDEYQVKMEDS

SwissProt top hits

e value

%identity

Alignment

Q6ID77 Mediator of RNA polymerase II transcription subunit 11

5.3e-46

75.68

Show/hide

Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEYV+++
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEY
        L+ ++QT D Y
Subjt:  LDGMEQTIDEY

Arabidopsis top hits

e value

%identity

Alignment

AT3G01435.1 Expressed protein

3.8e-47

75.68

Show/hide

Query:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEYV+++
Subjt:  MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISK

Query:  LDGMEQTIDEY
        L+ ++QT D Y
Subjt:  LDGMEQTIDEY

Sequences

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CDS sequence

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ATGGATCCGCCGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCC
AACCCTGCCGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTACGGGATGAAATCAAAAGTGCA
TGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATATGTGATTTCGAAGTTGGATGGAATGGAA
CAAACTATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA

mRNA sequence

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ACAGATTAGTTTGTTTAAATTCCTTCATTGCTGTGTGATTTATCAGGGCCAGCACAGTTCTTGATGGATCCGCCGACCCAGAATACTTCGTTGCAACGCCTTCAA
AATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCCGGTCCAAGAAAGGAATTTGTCAACAATCATTGC
AGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTACGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGG
ATTACTAATGAACTTTGCTGCAAGAAACTGGAATATGTGATTTCGAAGTTGGATGGAATGGAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA

Protein sequence

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MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGME
QTIDEYQVKMEDS

CaUC01G011360 (gene) of Watermelon (USVL246-FR2) v1 genome