; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC01G012460 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G012460
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionrecQ-mediated genome instability protein 2
Genome locationCiama_Chr01:24320561..24324968
RNA-Seq ExpressionCaUC01G012460
SyntenyCaUC01G012460
Gene Ontology termsGO:0009555 - pollen development (biological process)
GO:0033045 - regulation of sister chromatid segregation (biological process)
GO:0043007 - maintenance of rDNA (biological process)
GO:2000042 - negative regulation of double-strand break repair via homologous recombination (biological process)
GO:0005829 - cytosol (cellular component)
GO:0016607 - nuclear speck (cellular component)
InterPro domainsIPR032245 - RecQ-mediated genome instability protein 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462275.1 PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo]1.6e-5987.31Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH
        MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTGTV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I+VH
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH

Query:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
        KIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Subjt:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF

XP_022152884.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia]9.4e-6086.57Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH
        MDYSLAALK+LC QL  AR TPS +AATLGGILFQRAWLQGILVSVDK N +L+LDDGTGTV+LSLSRDFRLRPW+LGMYVMVVGAFV+R NEPPII VH
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH

Query:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
        KIVDLS+FP REAMWYLEVMEAYKMFYEPLIEEF
Subjt:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF

XP_022964663.1 uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata]5.3e-6391.11Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH
        MDYSLAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTGTV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIAVH
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH

Query:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
        KIVDLS FPGREAMWYLEVMEAYKMFYEPL+EEFS
Subjt:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS

XP_022970350.1 uncharacterized protein LOC111469342 [Cucurbita maxima]2.4e-6391.11Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH
        MDY+LAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTGTV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIAVH
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH

Query:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
        KIVDLSKFPGREAMWYLEVMEAYKMFYEPL+EEFS
Subjt:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS

XP_038894076.1 uncharacterized protein LOC120082820 [Benincasa hispida]4.8e-6491.85Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH
        MDYSLAALKLLCRQLKDARQ+P+NNAATLGGILFQRAWLQG LVSVDK+N KLILDDGTGTV+LSLSRDFRLRPW LGMYVMVVGAFV RTNEPP+IAVH
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH

Query:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
        KIVDLSKFP REAMWYLEV+EAYKMFYEPLIEEFS
Subjt:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS

TrEMBL top hitse value%identityAlignment
A0A1S3CGI5 recQ-mediated genome instability protein 27.7e-6087.31Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH
        MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTGTV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I+VH
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH

Query:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
        KIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Subjt:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF

A0A5A7UD07 RecQ-mediated genome instability protein 27.7e-6087.31Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH
        MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTGTV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I+VH
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH

Query:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
        KIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Subjt:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF

A0A6J1DF83 recQ-mediated genome instability protein 2 isoform X14.5e-6086.57Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH
        MDYSLAALK+LC QL  AR TPS +AATLGGILFQRAWLQGILVSVDK N +L+LDDGTGTV+LSLSRDFRLRPW+LGMYVMVVGAFV+R NEPPII VH
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH

Query:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
        KIVDLS+FP REAMWYLEVMEAYKMFYEPLIEEF
Subjt:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF

A0A6J1HLJ4 uncharacterized protein LOC111464675 isoform X12.6e-6391.11Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH
        MDYSLAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTGTV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIAVH
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH

Query:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
        KIVDLS FPGREAMWYLEVMEAYKMFYEPL+EEFS
Subjt:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS

A0A6J1I0C8 uncharacterized protein LOC1114693421.2e-6391.11Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH
        MDY+LAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTGTV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIAVH
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVH

Query:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
        KIVDLSKFPGREAMWYLEVMEAYKMFYEPL+EEFS
Subjt:  KIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS

SwissProt top hitse value%identityAlignment
A5PJU7 RecQ-mediated genome instability protein 21.2e-0433.59Show/hide
Query:  LKLLCRQL-KDARQTPSN---NAATLG--GILFQRAWLQGILVSVDKQNGKLILDDGTGTVDL-SLSRDFRLRPWSL-GMYVMVVGAFVVRTNEPPIIAV
        +K+L  QL +DA   P +   + A +G   +  +  W+QG +  V+   G   L D +G+  +  L R  R RP  + G YVMV+G     + EP + AV
Subjt:  LKLLCRQL-KDARQTPSN---NAATLG--GILFQRAWLQGILVSVDKQNGKLILDDGTGTVDL-SLSRDFRLRPWSL-GMYVMVVGAFVVRTNEPPIIAV

Query:  HKIVDLSKFPGREAMWYLEVMEAYKMFY
         K+ DLS  P  E++W LEV + ++  Y
Subjt:  HKIVDLSKFPGREAMWYLEVMEAYKMFY

Q3UPE3 RecQ-mediated genome instability protein 22.0e-0438.2Show/hide
Query:  WLQGILVSVDKQNGKLILDDGTGTVDL-SLSRDFRLRPWSL-GMYVMVVGAFVVRTNEPPIIAVHKIVDLSKFPGREAMWYLEVMEAYK
        W+QG +++   + G+  L D +G   +  L R  R RP  L G YVMV+G     + EP + AV K+ DLS  P  E+MW LEV + ++
Subjt:  WLQGILVSVDKQNGKLILDDGTGTVDL-SLSRDFRLRPWSL-GMYVMVVGAFVVRTNEPPIIAVHKIVDLSKFPGREAMWYLEVMEAYK

Q5ZM20 RecQ-mediated genome instability protein 28.1e-0633.59Show/hide
Query:  LKLLCRQLKDARQTP------SNNAATLGGILFQRAWLQGILVSVDK-QNGKLILDDGTGTVDLSLSRDF-RLRP-WSLGMYVMVVGAFVVRTNEP-PII
        LK+L  QL+ A +        S        +  +  W+QG ++ V++   G   L DG+G   +    D  R RP  S G YVMV+G  +VR   P P++
Subjt:  LKLLCRQLKDARQTP------SNNAATLGGILFQRAWLQGILVSVDK-QNGKLILDDGTGTVDLSLSRDF-RLRP-WSLGMYVMVVGAFVVRTNEP-PII

Query:  AVHKIVDLSKFPGREAMWYLEVMEAYKM
           K+ DLS+ P  E MW LEV E +++
Subjt:  AVHKIVDLSKFPGREAMWYLEVMEAYKM

Q96E14 RecQ-mediated genome instability protein 22.1e-0637.6Show/hide
Query:  LKLLCRQL-KDARQTP-----SNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDL-SLSRDFRLRPWSL-GMYVMVVGAFVVRTNEPPIIAV
        LK+L  QL +DA   P     S  AA  G +     W+QG +V  D+  G+  L D +G   +  L R  R RP  + G YVMV+G     + EP + AV
Subjt:  LKLLCRQL-KDARQTP-----SNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDL-SLSRDFRLRPWSL-GMYVMVVGAFVVRTNEPPIIAV

Query:  HKIVDLSKFPGREAMWYLEVMEAYK
         K+ DLS  P  E+MW LEV + ++
Subjt:  HKIVDLSKFPGREAMWYLEVMEAYK

Arabidopsis top hitse value%identityAlignment
AT1G08390.1 unknown protein1.4e-4865.69Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGK--LILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIA
        MDYSLAA+K+LC QL+DA+ TPS NAA+LGG+LFQRAWLQG+LV      G   L+LDDGTG ++L L+ DF LR W  GMYVMVVG + VRT + P++ 
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGK--LILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIA

Query:  VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
        VHK+VDLS  P REAMWYLEVM+AY++FYEPLI+EFS
Subjt:  VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGTAGTGCACATGGTGGAGATCAGAAACGCAAAGGGCGGCAGGACGATCTGAAACGAGGGTTGCACGTGATGGAGAAATGGCGAGTGGGGAACGGAGAAACAGG
AAGTGCAGAGAGAGATATGGATTACAGCTTAGCGGCGTTGAAGCTTCTGTGCCGGCAGCTCAAAGACGCCCGCCAAACTCCGTCCAACAACGCCGCCACTCTCGGCGGCA
TTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGACCTCTCTCTCTCTCGC
GACTTCCGTCTCCGCCCTTGGAGCCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACGAATGAGCCGCCCATTATTGCGGTCCACAAGATTGTTGATCT
CTCAAAGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGATTGAAGAATTTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGTAGTGCACATGGTGGAGATCAGAAACGCAAAGGGCGGCAGGACGATCTGAAACGAGGGTTGCACGTGATGGAGAAATGGCGAGTGGGGAACGGAGAAACAGG
AAGTGCAGAGAGAGATATGGATTACAGCTTAGCGGCGTTGAAGCTTCTGTGCCGGCAGCTCAAAGACGCCCGCCAAACTCCGTCCAACAACGCCGCCACTCTCGGCGGCA
TTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGACCTCTCTCTCTCTCGC
GACTTCCGTCTCCGCCCTTGGAGCCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACGAATGAGCCGCCCATTATTGCGGTCCACAAGATTGTTGATCT
CTCAAAGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGATTGAAGAATTTTCGTAACTTGTTTTGTTGACTC
AACAGGTGATGATTATTTTATTTACATGTTGATCCTGTTATGAATAATGCATCAATTTGTTGTAAGCCCACAGAATATATATATATATATTTTAATCTCTTATTACATAT
TTGTAAACTTC
Protein sequenceShow/hide protein sequence
MWSSAHGGDQKRKGRQDDLKRGLHVMEKWRVGNGETGSAERDMDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSR
DFRLRPWSLGMYVMVVGAFVVRTNEPPIIAVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS