; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC01G012500 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G012500
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationCiama_Chr01:24425470..24426906
RNA-Seq ExpressionCaUC01G012500
SyntenyCaUC01G012500
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0050789 - regulation of biological process (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059738.1 hypothetical protein E6C27_scaffold551G00160 [Cucumis melo var. makuwa]4.0e-1059.65Show/hide
Query:  DGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNT
        D +SF L T+Y P D  +  DFW ELD+LAGLGG  W+IGGNFNVTR  W  S +NT
Subjt:  DGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNT

KAE8647279.1 hypothetical protein Csa_002929 [Cucumis sativus]1.7e-0861.36Show/hide
Query:  QELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFNQ
        +ELDDL GLGG+ W+ GG+ N+TRW WEKSHD  I ++M  FNQ
Subjt:  QELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFNQ

TYK17414.1 hypothetical protein E5676_scaffold434G002760 [Cucumis melo var. makuwa]1.3e-0870.27Show/hide
Query:  ELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSS
        +LDDLAGLGG+ W++GGNFNVTRW WEKSH +T+++S
Subjt:  ELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSS

VVA20479.1 Hypothetical predicted protein, partial [Prunus dulcis]1.1e-0744.62Show/hide
Query:  GYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFN
        G  +WL  +YGP        FW+EL DL G  G+KW +GG+FNV R+  EKS++  ++ SM  FN
Subjt:  GYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFN

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]2.8e-1150Show/hide
Query:  DGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFN
        DG+ FW+  +YGP    FH  FWQEL DL+ L    W++ G+FNVTRW WEKS+   ++ SM  FN
Subjt:  DGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFN

TrEMBL top hitse value%identityAlignment
A0A0A0KDG4 Uncharacterized protein8.2e-0961.36Show/hide
Query:  QELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFNQ
        +ELDDL GLGG+ W+ GG+ N+TRW WEKSHD  I ++M  FNQ
Subjt:  QELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFNQ

A0A0A0LW63 Uncharacterized protein5.1e-1164.44Show/hide
Query:  DGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNV
        DG+SFW   +YGPYD+ FH DFW EL D+AGLGGE W+IGG+F +
Subjt:  DGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNV

A0A5D3CGF9 Uncharacterized protein1.9e-1059.65Show/hide
Query:  DGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNT
        D +SF L T+Y P D  +  DFW ELD+LAGLGG  W+IGGNFNVTR  W  S +NT
Subjt:  DGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNT

A0A5D3D2A8 Uncharacterized protein6.2e-0970.27Show/hide
Query:  ELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSS
        +LDDLAGLGG+ W++GGNFNVTRW WEKSH +T+++S
Subjt:  ELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSS

A0A6J1E2G6 uncharacterized protein LOC1110254051.3e-1150Show/hide
Query:  DGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFN
        DG+ FW+  +YGP    FH  FWQEL DL+ L    W++ G+FNVTRW WEKS+   ++ SM  FN
Subjt:  DGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAGGCATCTCCTTGATTCTCAAGCTGCTAAAAAAGATGGGTATTCGTTTTGGCTCTTTACACTTTATGGCCCATATGATAATGCTTTTCATGCTGATTTTTGGCA
AGAACTTGATGATTTGGCTGGTTTGGGTGGTGAAAAGTGGGTTATTGGTGGCAATTTCAATGTCACTAGGTGGCCATGGGAGAAATCTCACGATAACACAATCTCATCTA
GTATGCATACTTTTAACCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTAGGCATCTCCTTGATTCTCAAGCTGCTAAAAAAGATGGGTATTCGTTTTGGCTCTTTACACTTTATGGCCCATATGATAATGCTTTTCATGCTGATTTTTGGCA
AGAACTTGATGATTTGGCTGGTTTGGGTGGTGAAAAGTGGGTTATTGGTGGCAATTTCAATGTCACTAGGTGGCCATGGGAGAAATCTCACGATAACACAATCTCATCTA
GTATGCATACTTTTAACCAATGA
Protein sequenceShow/hide protein sequence
MIRHLLDSQAAKKDGYSFWLFTLYGPYDNAFHADFWQELDDLAGLGGEKWVIGGNFNVTRWPWEKSHDNTISSSMHTFNQ