CuGenDBv2

Gene ID	CaUC01G012630
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Ciama_Chr01:24687546..24687824
RNA-Seq Expression	CaUC01G012630
Synteny	CaUC01G012630
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007642 - RNA polymerase Rpb2, domain 2 IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037034 - RNA polymerase Rpb2, domain 2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88911.1 RNA polymerase beta subunit [Lagenaria siceraria]

1.6e-31

79.35

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGR ELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++KNQIGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

APW82623.1 RNA polymerase beta subunit [Citrullus lanatus subsp. vulgaris]

1.2e-31

79.35

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Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++KN+IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

YP_009127353.1 RNA polymerase beta subunit [Haematoxylum brasiletto]

1.6e-31

79.35

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Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND+DK +IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

YP_009325981.1 RNA polymerase beta subunit [Citrullus lanatus]

1.2e-31

79.35

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Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++KN+IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

YP_009420786.1 RNA polymerase beta subunit [Citrullus colocynthis]

1.2e-31

79.35

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++KN+IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LD96 DNA-directed RNA polymerase subunit beta

6.0e-32

79.35

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++KN+IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

A0A1P8LDX8 DNA-directed RNA polymerase subunit beta

6.0e-32

79.35

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++KN+IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

A0A1P8LF53 DNA-directed RNA polymerase subunit beta

6.0e-32

79.35

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++KN+IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

A0A249RXB4 DNA-directed RNA polymerase subunit beta

6.0e-32

79.35

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++KN+IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

A0A343A8A2 DNA-directed RNA polymerase subunit beta

6.0e-32

79.35

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++KN+IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

SwissProt top hits

e value

%identity

Alignment

A0ZZ27 DNA-directed RNA polymerase subunit beta

4.0e-33

77.17

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFL D++K +IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

Q0ZJ28 DNA-directed RNA polymerase subunit beta

1.1e-33

77.17

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTI+S+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++K +IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

Q2L8Z9 DNA-directed RNA polymerase subunit beta

4.0e-33

77.17

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFL D++K +IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

Q49L06 DNA-directed RNA polymerase subunit beta

8.1e-34

78.26

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++K +IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

Q4VZP1 DNA-directed RNA polymerase subunit beta

8.1e-34

78.26

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEIDRKA IW RVSRKQKISILVLS A+ SNLREILENVCY EI LSFLND++K +IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

3.2e-33

Show/hide

Query:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS
        +QS  +YY  ELDHN I VYTGTIIS+WGGRLELEID+KA IW RVSRKQKISILVLS A+  NLREILENVCY EI LSFL D++K +IGS
Subjt:  MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

Sequences

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CDS sequence

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ATGCAAAGCCTCGATGTCTATTACGGGTTAGAATTGGACCATAACGAAATTTTGGTCTATACTGGCACCATAATATCTAATTGGGGAGGAAGATTAGAATTAGAA
ATTGATCGAAAAGCAAGTATATGGGTTCGTGTGAGTAGGAAACAGAAAATATCTATTCTAGTTCTATCACCAGCTATAGATTCGAATCTAAGAGAAATTCTTGAG
AATGTTTGCTACTCTGAAATTTGTTTGTCTTTCCTGAATGATAGAGATAAAAATCAAATTGGATCATAA

mRNA sequence

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Protein sequence

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MQSLDVYYGLELDHNEILVYTGTIISNWGGRLELEIDRKASIWVRVSRKQKISILVLSPAIDSNLREILENVCYSEICLSFLNDRDKNQIGS

CaUC01G012630 (gene) of Watermelon (USVL246-FR2) v1 genome